CB305039

Overview
NameCB305039
Unique NameCB305039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_PAPCY (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Papio cynocephalus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = -3
Query:  315 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 584
            KA  D  I  F V KG  V +N+WA+  +E  W  P  F+PERFL  +       +   +PFGAG R C G  LA + L L++  L+  FD
Sbjct:  374 KANVDSSIGEFAVDKGTHVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSLSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFD 464          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_MACMU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Macaca mulatta GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = -3
Query:  315 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 584
            KA  D  I  F V KG  V +N+WA+  +E  W  P  F+PERFL  +       +   +PFGAG R C G  LA + L L++  L+  FD
Sbjct:  374 KANVDSSIGEFAVDKGTHVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSLSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFD 464          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_MACFA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Macaca fascicularis GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = -3
Query:  315 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 584
            KA  D  I  F V KG  V +N+WA+  +E  W  P  F+PERFL  +       +   +PFGAG R C G  LA + L L++  L+  FD
Sbjct:  374 KANVDSSIGEFAVDKGTHVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSLSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFD 464          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C90C1_ARATH (Cytochrome P450 90C1 OS=Arabidopsis thaliana GN=ROT3 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = -3
Query:  312 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW 587
            RKA KDVEI G+ +PKG  V  +  ++  DE  +DNP+ F P R+   N      +    PFG G+R+CPGL L+   + + L  L+  + W
Sbjct:  396 RKALKDVEIKGYLIPKGWCVLASFISVHMDEDIYDNPYQFDPWRWDRINGS-ANSSICFTPFGGGQRLCPGLELSKLEISIFLHHLVTRYSW 486          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP3AR_ONCMY (Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp3a27 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = -3
Query:  255 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL-DNHNMDME-DKFGLTVQK 587
            R A K VEI G  +PK   V V  W + RD   W +P  F PERF   N +     +  +PFGAG R C G+  A+ M+ L +  ++ SF + + D   + +E D  GL + K
Sbjct:  380 RVAKKTVEINGIVIPKDCIVLVPTWTLHRDPEIWSDPEEFKPERFSKENKE-SIDPYTYMPFGAGPRNCIGMRFALIMIKLAMVEILQSFTFSVCDETEIPLEMDNQGLLMPK 491          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_LIMLI (Cytochrome P450 1A1 OS=Limanda limanda GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = -3
Query:  258 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD--FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW-KLDNHNMDMEDKFGLTVQ 578
            TKD  + G+ +PK   VF+N W I  D   W +P +F P+RFL ++     K    +++ FG G+R C G  +A   ++L L  LI    +  +    +DM  ++GLT++
Sbjct:  396 TKDTSLNGYFIPKDTCVFINQWQINHDPEMWKDPSSFNPDRFLSADGSEVNKLDGEKVMAFGMGKRRCIGEVIARNEVYLFLAILIQKLHFLPIPGEKLDMTPEYGLTMK 505          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C90D2_ORYSJ (Cytochrome P450 90D2 OS=Oryza sativa subsp. japonica GN=CYP90D2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = -3
Query:  312 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW 587
            RKA +DVE+ G  +PKG  VFV   ++  D++ +D P+ F P R+   +      N    PFG G+R+CPGL LA     + L  L+ SF W
Sbjct:  373 RKAVRDVEVKGHLIPKGWCVFVYFRSVHLDDTLYDEPYKFNPWRWKEKDM----SNGSFTPFGGGQRLCPGLDLARLEASIFLHHLVTSFRW 460          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2R1_HUMAN (Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = -3
Query:  258 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNM-DMEDKFGLTVQ 578
            ++D  + G+++PKG  V  N++++  DE  W +P  F PERFL S+  F  +   L+PF  GRR C G  LA   + L   +L+  F     +  + D++ + G+T+Q
Sbjct:  384 SEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYF-AKKEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQ 490          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DG_CAVPO (Cytochrome P450 2D16 OS=Cavia porcellus GN=CYP2D16 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  306 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 578
            ++D E+ GF +PKG  +F N+ ++ +DE+ W+ P  F P  FL +   F  +    +PF AG RIC G PLA   L L   SL+  F + +
Sbjct:  382 SRDTEVQGFLIPKGTMLFTNLSSVLKDETVWEKPLHFHPGHFLDAEGRFVKRE-AFMPFSAGPRICLGEPLARMELFLFFTSLLQRFSFSV 471          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_MICTO (Cytochrome P450 1A1 OS=Microgadus tomcod GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = -3
Query:  258 ATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD--FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW-KLDNHNMDMEDKFGLTVQ 581
            ATKD  + G+ +PK   VF+N W I  D   W  P TF P+RFL ++A    K    +++ FG G+R C G  +A   + L L  L+    +  +    +DM  ++GLT++
Sbjct:  391 ATKDTSLDGYFIPKDTCVFINQWQINHDPELWKEPSTFNPDRFLSADASELNKLAGEKVMLFGMGKRRCIGEMVARNEVFLFLAILVQRLTFHAVPGEPLDMTPEYGLTMK 501          
The following BLAST results are available for this feature:
BLAST of CB305039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CP17A_PAPCY2.284e-1139.56Steroid 17-alpha-hydroxylase/17,20 lyase OS=Papio ... [more]
CP17A_MACMU2.284e-1139.56Steroid 17-alpha-hydroxylase/17,20 lyase OS=Macaca... [more]
CP17A_MACFA2.284e-1139.56Steroid 17-alpha-hydroxylase/17,20 lyase OS=Macaca... [more]
C90C1_ARATH2.284e-1138.04Cytochrome P450 90C1 OS=Arabidopsis thaliana GN=RO... [more]
CP3AR_ONCMY2.982e-1136.28Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp... [more]
CP1A1_LIMLI2.982e-1132.73Cytochrome P450 1A1 OS=Limanda limanda GN=cyp1a1 P... [more]
C90D2_ORYSJ2.982e-1139.13Cytochrome P450 90D2 OS=Oryza sativa subsp. japoni... [more]
CP2R1_HUMAN3.895e-1133.33Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1... [more]
CP2DG_CAVPO3.895e-1137.36Cytochrome P450 2D16 OS=Cavia porcellus GN=CYP2D16... [more]
CP1A1_MICTO3.895e-1134.23Cytochrome P450 1A1 OS=Microgadus tomcod GN=cyp1a1... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305039 ID=CB305039; Name=CB305039; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTATTAAATNNNATGACT
TTATAGTTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAA
AAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAAC
CACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCT
ACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTT
GAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGG
TTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATG
TAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTC
CGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCT
AAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATC
TCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTG
TGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAG
GGAGCTGCAGGGTGCAATCTCA
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