CB305039

Overview
NameCB305039
Unique NameCB305039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C79B3_ARATH (Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana GN=CYP79B3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 36/107 (33.64%), Postives = 52/107 (48.60%), Query Frame = -3
Query:  306 RLHXXXXXXXPRKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 620
            RLH       P  A  D  +AG+ +PKG+QV ++ + +GR+   W +P +F PER L   S       +   I F  G+R C    L   +  +ML  L+  F WKL
Sbjct:  398 RLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKL 504          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C79B2_ARATH (Tryptophan N-hydroxylase 1 OS=Arabidopsis thaliana GN=CYP79B2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 37/115 (32.17%), Postives = 54/115 (46.96%), Query Frame = -3
Query:  282 RLHXXXXXXXPRKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDME 620
            RLH       P  A  D  +AG+ +PKG+QV ++ + +GR+   W +P  F PER L   S       +   I F  G+R C    L   +  +ML  L+  F WKL  +   +E
Sbjct:  396 RLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWADPLCFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTALTTMMLARLLQGFTWKLPENETRVE 510          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C5081_DICDI (Probable cytochrome P450 508A1 OS=Dictyostelium discoideum GN=cyp508a1-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  258 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK-LDNHNMDMEDKFGLTVQ 587
            R ++KD  I G  +PK AQ+ +N  A+G +E  ++NP  F P RFL   +     N   +PF  G R C G   A   L++ + +++ +F  K +D   +D  +++GLT++
Sbjct:  365 RSSSKDCMIGGHFIPKNAQILINYQALGMNEEYYENPEQFDPSRFLKVES-----NVAFLPFSIGIRSCVGQSFAQDELYICISNILLNFKLKSIDGKKIDETEEYGLTLK 470          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_PLEPL (Cytochrome P450 1A1 OS=Pleuronectes platessa GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 35/110 (31.82%), Postives = 59/110 (53.64%), Query Frame = -3
Query:  258 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD--FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW-KLDNHNMDMEDKFGLTVQ 578
            TKD  + G+ +PK   VF+N W I  D   W +P +F P+RFL ++     K    +++ FG G+R C G  +A   ++L L  +I    +  +    +DM  ++GLT++
Sbjct:  396 TKDTSLNGYFIPKDTCVFINQWQINHDPELWKDPSSFNPDRFLSADGSEVNKLDGEKVMAFGMGKRRCIGEVIARNEVYLFLAIIIQKLHFLPIPGEKLDMTPEYGLTMK 505          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_PLAFE (Cytochrome P450 1A1 OS=Platichthys flesus GN=cyp1a1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 35/110 (31.82%), Postives = 59/110 (53.64%), Query Frame = -3
Query:  258 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD--FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW-KLDNHNMDMEDKFGLTVQ 578
            TKD  + G+ +PK   VF+N W I  D   W +P +F P+RFL ++     K    +++ FG G+R C G  +A   ++L L  +I    +  +    +DM  ++GLT++
Sbjct:  396 TKDTSLNGYFIPKDTCVFINQWQINHDPELWKDPSSFNPDRFLSADGSEVNKLDGEKVMAFGMGKRRCIGEVIARNEVYLFLAIIIQKLHFLPIPGEKLDMTPEYGLTMK 505          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_LIZSA (Cytochrome P450 1A1 OS=Liza saliens GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = -3
Query:  258 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD--FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW-KLDNHNMDMEDKFGLTVQ 578
            TKD  + G+ +PK   VF+N W I  D   W  P +F P+RFL ++     K    +++ FG G+R C G  +A   ++L L  LI    +  L    +DM  ++GLT++
Sbjct:  396 TKDTSLNGYYIPKDTCVFINQWQINHDPELWKEPSSFNPDRFLSADGTEVNKVDGEKVMIFGMGKRRCIGEVIARNEVYLFLAILIQKLHFCNLPGEPLDMTPEYGLTMK 505          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_LIZAU (Cytochrome P450 1A1 OS=Liza aurata GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = -3
Query:  258 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD--FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD-WKLDNHNMDMEDKFGLTVQ 578
            TKD  + G+ +PK   VF+N W I  D   W  P +F P+RFL ++     K    +++ FG G+R C G  +A   +++ L  LI     + L    +DM  ++GLT++
Sbjct:  396 TKDTSLNGYYIPKDTCVFINQWQINHDPELWKEPSSFNPDRFLSADGTEVNKVDGEKVMVFGLGKRRCIGEVIARNEVYMFLAILIQKLHFYNLPGEPLDMTPEYGLTMK 505          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_CAVPO (Cytochrome P450 1A1 OS=Cavia porcellus GN=CYP1A1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 38/115 (33.04%), Postives = 59/115 (51.30%), Query Frame = -3
Query:  240 TKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKAQPLH 578
            TKD  + GF +PKG  +FVN W I  D+  W +P  F PERFL  +    K  + ++  FG G+R C G  +    + L L  L+   ++       +DM   +GLT++ ++  H
Sbjct:  387 TKDTSLNGFYIPKGCCIFVNQWQINHDQKLWGDPSVFRPERFLSPDGTVDKALSEKVTIFGLGKRRCLGEVIGRWEVFLFLAILLQQLEFSTSPGVKIDMTPIYGLTMKYSRCEH 501          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_BOVIN (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bos taurus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = -3
Query:  306 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 584
            KA  D  I   T+ KG  V VN+WA+   E  W +P  F+PERFL  +       +   +PFGAG R C G  LA + L L +  L+  F+ ++
Sbjct:  374 KAVIDSSIGDLTIDKGTDVVVNLWALHHSEKEWQHPDLFMPERFLDPTGTQLISPSLSYLPFGAGPRSCVGEMLARQELFLFMSRLLQRFNLEI 467          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_BISBI (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bison bison GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = -3
Query:  306 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 584
            KA  D  I   T+ KG  V VN+WA+   E  W +P  F+PERFL  +       +   +PFGAG R C G  LA + L L +  L+  F+ ++
Sbjct:  374 KAVIDSSIGDLTIDKGTDVVVNLWALHHSEKEWQHPDLFMPERFLDPTGTQLISPSLSYLPFGAGPRSCVGEMLARQELFLFMSRLLQRFNLEI 467          
The following BLAST results are available for this feature:
BLAST of CB305039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
C79B3_ARATH3.895e-1133.64Tryptophan N-hydroxylase 2 OS=Arabidopsis thaliana... [more]
C79B2_ARATH3.895e-1132.17Tryptophan N-hydroxylase 1 OS=Arabidopsis thaliana... [more]
C5081_DICDI3.895e-1132.43Probable cytochrome P450 508A1 OS=Dictyostelium di... [more]
CP1A1_PLEPL5.087e-1131.82Cytochrome P450 1A1 OS=Pleuronectes platessa GN=cy... [more]
CP1A1_PLAFE5.087e-1131.82Cytochrome P450 1A1 OS=Platichthys flesus GN=cyp1a... [more]
CP1A1_LIZSA5.087e-1133.64Cytochrome P450 1A1 OS=Liza saliens GN=cyp1a1 PE=2... [more]
CP1A1_LIZAU5.087e-1132.73Cytochrome P450 1A1 OS=Liza aurata GN=cyp1a1 PE=2 ... [more]
CP1A1_CAVPO5.087e-1133.04Cytochrome P450 1A1 OS=Cavia porcellus GN=CYP1A1 P... [more]
CP17A_BOVIN5.087e-1137.23Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bos ta... [more]
CP17A_BISBI5.087e-1137.23Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bison ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305039 ID=CB305039; Name=CB305039; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTATTAAATNNNATGACT
TTATAGTTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAA
AAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAAC
CACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCT
ACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTT
GAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGG
TTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATG
TAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTC
CGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCT
AAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATC
TCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTG
TGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAG
GGAGCTGCAGGGTGCAATCTCA
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