CB305039

Overview
NameCB305039
Unique NameCB305039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C79B1_SINAL (Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 36/115 (31.30%), Postives = 55/115 (47.83%), Query Frame = -3
Query:  282 RLHXXXXXXXPRKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG--SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHNMDME 620
            RLH       P  A  D  +AG+ +PKG+QV ++ + +GR+   W +P +F PER L   S       +   I F  G+R C    L   +  ++L  L+  F WKL  +   +E
Sbjct:  397 RLHPVAAFNLPHVALSDATVAGYHIPKGSQVLLSRYGLGRNPKVWADPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTALTTMLLARLLQGFTWKLPENETRVE 511          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: C508C_DICDI (Probable cytochrome P450 508C1 OS=Dictyostelium discoideum GN=cyp508c1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = -3
Query:  261 RLHXXXXXXXPRKATKDVEIA--GFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK-LDNHNMDMEDKFGLTV 620
            R+H       PR    D+ I    + +PKG +VF+N  +IG +E  + +P+ F P RFL  N++    +F   PFG G R+C G  LA   L+L++ +LI  +  K +D + ++ +  FGLTV
Sbjct:  364 RMHPVVVFGLPRYCENDIFIGDENYFIPKGCKVFINFHSIGYNEKYFKDPYKFEPNRFL-ENSNNSMDSF--FPFGLGNRVCLGRQLANDQLYLVIANLILKYKLKTIDENKINEDGIFGLTV 483          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2J1_RABIT (Cytochrome P450 2J1 OS=Oryctolagus cuniculus GN=CYP2J1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 42/123 (34.15%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  225 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWK-LDNHNMDMEDKFGLTVQKAQ-PLHAVPGA 587
            R+ T D  +AG+ +PKG  V  N+ A+ +D   W  P TF PE FL  N  FK +    IPF  G+R C G  LA   L +   SL+  F +K   +  + +  + G+T+   +  + A+P A
Sbjct:  381 REVTVDTTLAGYHLPKGTVVLTNLTALHKDPEEWATPDTFNPEHFL-ENGQFKKKE-AFIPFSIGKRACLGEQLAKSELFIFFTSLMQKFTFKPPSDEKLTLNFRMGITLSPVKHRICAIPRA 501          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DA_RAT (Cytochrome P450 2D10 OS=Rattus norvegicus GN=Cyp2d10 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  306 DVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 572
            D+E+  F +PKG  + +N+ ++ +DE+ W+ P  F PE FL +  +F  ++   +PF AGRR C G PLA   L L    L+  F + +
Sbjct:  384 DIEVQDFVIPKGTTLIINLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQHFSFSV 471          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2DA_MOUSE (Cytochrome P450 2D10 OS=Mus musculus GN=Cyp2d10 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = -3
Query:  300 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADF-KGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDN 587
            R  ++D+E+  F +PKG+ +  N+ ++ +DE+ W+ P  F PE FL +   F K + F  +PF AGRR C G PLA   L L    L+  F + + N
Sbjct:  379 RITSRDIEVQDFLIPKGSILIPNMSSVLKDETVWEKPLRFHPEHFLDAQGHFVKPEAF--MPFSAGRRSCLGEPLARMELFLFFTCLLQHFSFSVPN 473          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_SHEEP (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ovis aries GN=CYP17A1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = -3
Query:  306 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 584
            KA  D  I   T+ KG  V VN+WA+  +E  W  P  F+PERFL  +       +   +PFGAG R C G  LA + L L +  L+  F+ ++
Sbjct:  374 KAIIDSSIGDLTIDKGTDVVVNLWALHHNEKEWQQPDLFMPERFLDPTGTQLISPSLSYLPFGAGPRSCVGEMLARQELFLFMSRLLQRFNLEI 467          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_ONCMY (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oncorhynchus mykiss GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 42/125 (33.60%), Postives = 63/125 (50.40%), Query Frame = -3
Query:  225 ATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL---GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLDNHN--MDMEDKFGLTVQKAQ-PLHAVPGA 581
            A  D  I  FTV KGA++ +N+W++  DE  W NP  F P RFL   G+       ++  +PFGAG R+C G  LA   + L L  ++      +        +E KFG+ +Q  +  ++A P A
Sbjct:  382 AQTDTSIGKFTVRKGARIIINLWSLHHDEKEWKNPEMFDPGRFLNEEGTGLCIPSPSY--LPFGAGVRVCLGEALAKMEIFLFLSWILQRLTMTVSPGQPLPSLEGKFGVVLQPVKYKVNATPRA 504          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_FELCA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Felis catus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 35/91 (38.46%), Postives = 48/91 (52.75%), Query Frame = -3
Query:  315 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 584
            KA  D  I  F V KG  V +N+WA+  +E  W  P  F+PERFL  + +     +   +PFGAG R C G  LA + + L +  L+  FD
Sbjct:  374 KAIMDSSIGEFAVDKGTNVIINLWALHHNEKEWYRPDQFMPERFLDPTRSQLISPSLSYLPFGAGPRSCLGESLARQEVFLFMAWLLQRFD 464          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_CAVPO (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Cavia porcellus GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 37/93 (39.78%), Postives = 49/93 (52.69%), Query Frame = -3
Query:  315 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFL---GSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFD 584
            KA  D  I  F + K   V VN+WA+  +E  WD P  F+PERFL   GS       ++  +PFGAG R C G  LA + + L+   L+  FD
Sbjct:  374 KANTDSSIGEFAIDKDTNVLVNLWALHHNEQEWDRPDQFMPERFLDPTGSQIIVPSSSY--LPFGAGPRSCVGEALARQEIFLITAWLLQKFD 464          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_CAPHI (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Capra hircus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = -3
Query:  306 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 584
            KA  D  I   T+ KG  V VN+WA+  +E  W  P  F+PERFL  +       +   +PFGAG R C G  LA + L L +  L+  F+ ++
Sbjct:  374 KAIIDSSIGDLTIDKGTDVVVNLWALHHNEKEWQQPDLFMPERFLDPTGTQLISPSLSYLPFGAGPRSCVGEMLARQELFLFMSRLLQRFNLEI 467          
The following BLAST results are available for this feature:
BLAST of CB305039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
C79B1_SINAL5.087e-1131.30Cytochrome P450 79B1 OS=Sinapis alba GN=CYP79B1 PE... [more]
C508C_DICDI5.087e-1134.96Probable cytochrome P450 508C1 OS=Dictyostelium di... [more]
CP2J1_RABIT6.644e-1134.15Cytochrome P450 2J1 OS=Oryctolagus cuniculus GN=CY... [more]
CP2DA_RAT6.644e-1135.96Cytochrome P450 2D10 OS=Rattus norvegicus GN=Cyp2d... [more]
CP2DA_MOUSE6.644e-1137.11Cytochrome P450 2D10 OS=Mus musculus GN=Cyp2d10 PE... [more]
CP17A_SHEEP6.644e-1137.23Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ovis a... [more]
CP17A_ONCMY6.644e-1133.60Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oncorh... [more]
CP17A_FELCA6.644e-1138.46Steroid 17-alpha-hydroxylase/17,20 lyase OS=Felis ... [more]
CP17A_CAVPO6.644e-1139.78Steroid 17-alpha-hydroxylase/17,20 lyase OS=Cavia ... [more]
CP17A_CAPHI6.644e-1137.23Steroid 17-alpha-hydroxylase/17,20 lyase OS=Capra ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305039 ID=CB305039; Name=CB305039; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTATTAAATNNNATGACT
TTATAGTTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAA
AAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAAC
CACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCT
ACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTT
GAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGG
TTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATG
TAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTC
CGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCT
AAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATC
TCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTG
TGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAG
GGAGCTGCAGGGTGCAATCTCA
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