CB305039

Overview
NameCB305039
Unique NameCB305039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11430 contig Csv1_Contig11430:1424..2045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP2J5_MOUSE (Cytochrome P450 2J5 OS=Mus musculus GN=Cyp2j5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = -3
Query:  252 RKATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKLD-NHNMDMEDKFGLTVQKA 587
            R+ T D +  GF +PKG  +  N+ A+ RD   W  P  F PE FL  N  FK +    +PF  G+R C G  LA   L +   +L+  F +K   N  + ++ + GL +  A
Sbjct:  381 REVTVDTKFNGFHLPKGTMILTNLTALHRDPKEWATPEVFNPEHFL-ENGQFKKRE-SFLPFSMGKRACLGEQLAKSELFIFFSALMQKFTFKPPINEKLSLKFRMGLILSPA 491          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP1A1_CHACA (Cytochrome P450 1A1 OS=Chaetodon capistratus GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = -3
Query:  258 ATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLGSNAD--FKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDW-KLDNHNMDMEDKFGLTVQ 581
            + KD  + G+ +PK   VF+N W I RD   W +P +F P+RFL  N     K +  +++ FG G+R C G  +A   ++  L  LI    + ++    +DM  ++GLT++
Sbjct:  395 SAKDTSLNGYFIPKDTCVFINQWQINRDPELWKDPSSFNPDRFLSCNGTEVNKQEGEKVMVFGMGKRRCIGEVIARNEVYRGLAILIQRLQFHEMPGELLDMTPEYGLTMK 505          
BLAST of CB305039 vs. ExPASy Swiss-Prot
Match: CP17A_PIG (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Sus scrofa GN=CYP17A1 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 36/94 (38.30%), Postives = 48/94 (51.06%), Query Frame = -3
Query:  306 KATKDVEIAGFTVPKGAQVFVNVWAIGRDESTWDNPHTFIPERFLG-SNADFKGQNFELIPFGAGRRICPGLPLAIRMLHLMLGSLINSFDWKL 584
            +A  D  I  FT+ K   V VN+WA+  +E  W  P  F+PERFL  +       +   +PFGAG R C G  LA + L L    L+  FD +L
Sbjct:  374 RAIIDSSIGEFTIDKDTDVVVNLWALHHNEKEWHRPDLFMPERFLDPTGTQLISPSLSYLPFGAGPRSCVGEMLARQELFLFTAGLLQRFDLEL 467          
The following BLAST results are available for this feature:
BLAST of CB305039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CP2J5_MOUSE8.677e-1133.63Cytochrome P450 2J5 OS=Mus musculus GN=Cyp2j5 PE=2... [more]
CP1A1_CHACA8.677e-1132.43Cytochrome P450 1A1 OS=Chaetodon capistratus GN=cy... [more]
CP17A_PIG8.677e-1138.30Steroid 17-alpha-hydroxylase/17,20 lyase OS=Sus sc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305039 ID=CB305039; Name=CB305039; organism=Citrus sinensis; type=EST; length=622bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTATTAAATNNNATGACT
TTATAGTTTATTGAAGATTAACTCTGTTAAGTTGCGTGTCTACATAAAAA
AAAATAAGAGCGCCCACACCTGAGAATGATTACACACACATATAACTAAC
CACCAAGCGCTTTATATAGTGGCTACCACCAAGCGCTTTATATATTGGCT
ACGAACTATAGTATAGAACTAGATGGCACCAGGGACAGCATGAAGGGGTT
GAGCCTTCTGTACGGTGAGGCCAAATTTATCTTCCATGTCCATGTTGTGG
TTATCAAGCTTCCAATCAAAAGAGTTAATAAGTGAACCCAACATTAGATG
TAACATTCTGATTGCCAATGGTAAACCAGGACAAATTCGTCGTCCAGCTC
CGAAGGGAATTAGCTCAAAATTCTGGCCTTTGAAATCAGCATTTGACCCT
AAGAACCTTTCGGGAATAAAAGTGTGAGGGTTGTCCCATGTGCTTTCATC
TCTGCCAATAGCCCATACATTGACAAAAACTTGTGCACCTTTTGGCACTG
TGAAGCCTGCAATTTCAACATCTTTTGTGGCTTTGCGGGGAAGTAATAAG
GGAGCTGCAGGGTGCAATCTCA
back to top