CB305043

Overview
NameCB305043
Unique NameCB305043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13484 contig Csv1_Contig13484:310..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAAM (Dehydrosqualene synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=crtM PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.123e-11
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = -1 
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    RVY  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:  129 YCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERVYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273
[Close]
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAAW (Dehydrosqualene synthase OS=Staphylococcus aureus (strain MW2) GN=crtM PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -1 
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:  129 YCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273
[Close]
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAAU (Dehydrosqualene synthase OS=Staphylococcus aureus GN=crtM PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = -1 
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED +  R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:  129 YCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVEKRKK 273
[Close]
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAAS (Dehydrosqualene synthase OS=Staphylococcus aureus (strain MSSA476) GN=crtM PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -1 
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:  129 YCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273
[Close]
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAAE (Dehydrosqualene synthase OS=Staphylococcus aureus (strain Newman) GN=crtM PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -1 
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:  129 YCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273
[Close]
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAAC (Dehydrosqualene synthase OS=Staphylococcus aureus (strain COL) GN=crtM PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -1 
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:  129 YCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273
[Close]
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAA8 (Dehydrosqualene synthase OS=Staphylococcus aureus (strain NCTC 8325) GN=crtM PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -1 
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:  129 YCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273
[Close]
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAA3 (Dehydrosqualene synthase OS=Staphylococcus aureus (strain USA300) GN=crtM PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -1 
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:  129 YCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273
[Close]
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAAB (Dehydrosqualene synthase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=crtM PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.268e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = -1 
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED +  R+Y  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+    Y    +R +V K KK
Sbjct:  129 YCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQASY-TLHERVFVYKRKK 273
The following BLAST results are available for this feature:
BLAST of CB305043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
CRTM_STAAM1.123e-1131.79Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAW1.467e-1131.13Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAU1.467e-1131.13Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAS1.467e-1131.13Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAE1.467e-1131.13Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAC1.467e-1131.13Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAA81.467e-1131.13Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAA31.467e-1131.13Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]
CRTM_STAAB3.268e-1131.13Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305043 ID=CB305043; Name=CB305043; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCGATATCCAAGCAATCATTTTC
ATGTTTGTTTCCACTTTGAATCCGTTTCAACTATATATGCTTCTAAACTT
TGATGTTAAATGTTCAGTTTAAGCCTTACTGGTATATATTCTTGACGGGC
GTAAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTTGGCT
TTACTCACATAAGCTCTCTTTGTGAAGTTGTTGTAATCATTGGCCTCAAT
CTCATCCAGTATTTGCCGGTACAACAGCAATGAAGCCCATACCGGCCATC
TACTAGCTTCACTCAGCTCGGTCACACCGTTCTCAGCCATATCAAAGAAC
ATCCTTGCCCTCTTAATTTGGTTCTTCATGGAGTTTCTCCATGTATTAGT
CACTTCTCCAGCAAATATGTCATCATCTGAAAGCCCCGCCTGTGCCAACT
CATCTTGTGGTAGATAAACCCTTCCTCTTTGGGCATCCTCTCCAACATCT
CTGAGTATGTTAGTGAGCTGATTAGCAATCCCTAGTGCCAATGCTGCATT
GTAGACGCTCTCTGTTGTTGCCTGTGAGTCAGGTGCTATGCCCATAACTG
GAACACTCATTAGCCCTACGGTCCCAGCAACATAATAACAATACAA
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