CB305046

Overview
NameCB305046
Unique NameCB305046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.749e-31
Identity = 69/120 (57.50%), Postives = 90/120 (75.00%), Query Frame = -1
Query:  290 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 646
            V VKT D+Y LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  125 VTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 67/134 (50.00%), Postives = 94/134 (70.15%), Query Frame = -1
Query:  260 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPA--DEPIPE 646
            VDVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     S DLK +V K + + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD    S++ G +++RP   + P+ E
Sbjct:  128 VDVKTTDGYLLRVFCIGFTNKDQMSQRKTCYAQHTQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGGSDEPGARVDRPEGYEPPVQE 261          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 70/131 (53.44%), Postives = 92/131 (70.23%), Query Frame = -1
Query:  263 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---YSEDVGVKMERPADEPIP 646
            V VKT+D Y LR+FCIGFTK+   Q+K+T YA++S+IRQIR KM E M  +    DLK +  K + + IG++IEKA   IYPLQ+V IRKVKILK PKF++G+LME+H D   ++   G K+ERP D   P
Sbjct:  122 VAVKTSDGYLLRLFCIGFTKKNARQLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSIGKDIEKACSYIYPLQDVCIRKVKILKKPKFEIGRLMEMHTDVSTFTSAEGEKIERPDDYEPP 252          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31
Identity = 64/110 (58.18%), Postives = 85/110 (77.27%), Query Frame = -1
Query:  317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646
            V VKT D+Y LR+F + FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+
Sbjct:  125 VTVKTADDYVLRVFALAFTKRQANQVKKTTYAQSSKLREVRKKMSEIMQREVSAVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKVLKQPKFDLGALLALHGE 234          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_ZYGRC (40S ribosomal protein S1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = -1
Query:  272 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADE 646
            V VKT+D Y +R+F I FT++ PNQVK+TCYAQ+S IR IR+   EI+  +  +  L     K I E+I +E+E AT  I+PLQNV +RKVK+LK PKFDLG LM +HG+ S++ G K+    DE
Sbjct:  125 VTVKTSDEYVIRVFAIAFTRKQPNQVKKTCYAQSSHIRAIRKVFSEILTREVQNSTLAQFTSKLIPEVINKEMENATKDIFPLQNVHVRKVKLLKQPKFDLGSLMALHGEGSDETGKKVSGFKDE 249          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.091e-30
Identity = 68/140 (48.57%), Postives = 96/140 (68.57%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--------YSEDVGVKMERPA--DEPIPEA 646
            VDVKTTD+Y LR+FCIGFT++     ++TCYAQ +Q+R IR+KM EI+  + +S DLK  V K I + I ++IEK+  SIYP+  V+IRKVK+LK PKFD+GKL+++HG+          +  GV + RP   + PI E+
Sbjct:  128 VDVKTTDSYLLRVFCIGFTQKDQRSQRKTCYAQHTQVRAIRKKMTEIITKEISSGDLKEAVSKLIPDSIAKDIEKSCHSIYPIHEVYIRKVKVLKKPKFDMGKLLDMHGEGAVTKRVTTEDGTGVVISRPEGYEPPIQES 267          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.430e-30
Identity = 66/134 (49.25%), Postives = 96/134 (71.64%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--YSEDVGVKMERPA--DEPIPEA 646
            VDV+TTD Y LR+FCIGFT +     ++TCYAQ +Q+RQIRRKM + + +  ++ DL+ +V K I + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD   S++ G K+ RP   + P+ E+
Sbjct:  128 VDVRTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRQIRRKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGSDEPGAKVSRPEAYEPPVQES 261          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = -1
Query:  290 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 646
            V VKT D+Y LR+FCI FT+R  NQ+K+T YAQ+SQ+  IR+KM EIM  + ++  L  L  K I E+IGREIEKA   IYPLQNV IRKVK+LK  KFDLG L+ +HG+  +E+ G K+
Sbjct:  125 VTVKTADDYVLRIFCIAFTRRHQNQIKKTTYAQSSQLSAIRKKMVEIMQREVSNVTLAQLTSKLIPEVIGREIEKAAEGIYPLQNVHIRKVKVLKQAKFDLGALLALHGESVTEENGKKV 244          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_LACTC (40S ribosomal protein S1 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 67/120 (55.83%), Postives = 84/120 (70.00%), Query Frame = -1
Query:  290 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 646
            V VKT D Y LR+F I FT+R PNQVK+ CYAQ+S IR IR+ + EI+  +  +  L  L  K I E+I +EIE AT  I+PLQNV IRKVK+LK PKFDLG LM +HG+ S E+ G K+
Sbjct:  125 VTVKTADEYVLRVFAIAFTRRQPNQVKKACYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNVHIRKVKLLKQPKFDLGALMTLHGEASGEEKGKKV 244          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_BIPLU (40S ribosomal protein S3a OS=Biphyllus lunatus PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 65/138 (47.10%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  257 DVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-------DVGVKMERPA--DEPIPEA 643
            DVKTTD Y LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+    +  DLK +V K + + I ++IEKA+  IYPL +V+IRKVK+LK P+F+L KL+E+HGD  +       + G K+++P   + P+ EA
Sbjct:  129 DVKTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRSIRKKMVEIITRDISGSDLKEVVNKLLPDSIAKDIEKASQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDSGKGGSGEPGEAGSKVDKPEGYEPPVQEA 266          
The following BLAST results are available for this feature:
BLAST of CB305046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
RS3A1_CLAL43.749e-3157.5040S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_PERAM6.395e-3150.0040S ribosomal protein S3a OS=Periplaneta americana... [more]
RS3A_BRUMA6.395e-3153.4440S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A1_PICST6.395e-3158.1840S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A_ZYGRC1.091e-3051.2040S ribosomal protein S1 OS=Zygosaccharomyces roux... [more]
RS3A_ARTSF1.091e-3048.5740S ribosomal protein S3a OS=Artemia sanfranciscan... [more]
RS3A_TRIIF2.430e-3049.2540S ribosomal protein S3a OS=Triatoma infestans PE... [more]
RS3A_PICPG3.174e-3056.6740S ribosomal protein S1 OS=Pichia pastoris (strai... [more]
RS3A_LACTC7.071e-3055.8340S ribosomal protein S1 OS=Lachancea thermotolera... [more]
RS3A_BIPLU9.234e-3047.1040S ribosomal protein S3a OS=Biphyllus lunatus PE=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305046 ID=CB305046; Name=CB305046; organism=Citrus sinensis; type=EST; length=649bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTAGAATAATGTATCTAA
TCCACTGGAATAAAGAATAAGGTAATCATGTTCATACCACAGAAACCGCT
GCAGCCATCTCAAATATCAGCTAGAATAAAATATGTAAACTCAAAACAAA
TTTGAGTTCATCACAAACAAAACTGCCCAAAAATTACTAGATCTGATTGG
TTATAAAGACAAACTACAAAAATTTTCTTTATTCAAGCTCCAATCACTTC
AGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTTCCATCTTTACAC
CAACATCCTCAGAGTAATCACCATGAACCTCCATCAACTTTCCAAGATCA
AACTTAGGAGCTTTCAAGATCTTCACTTTGCGGATGAAAACATTTTGTAA
GGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTCCAATTATTTCAG
CAATGAACTTTTCGACCAAGCCCTTAAGATCACACGATGCTGCCTGAGCA
ATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGCCTG
TGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCTTGGTGAATCCAA
TGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTGACATCCACGTA
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