CB305046
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS2 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1A PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.515e-27 Identity = 64/126 (50.79%), Postives = 85/126 (67.46%), Query Frame = -1 Query: 272 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 646 V VKT+D+Y LR+F I FT++ NQVKR YAQ+S IR IR+ + EI+ + L L K I E+I +EIE AT I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+ DE Sbjct: 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A1_YEAS1 (40S ribosomal protein S1-A OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1A PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.515e-27 Identity = 64/126 (50.79%), Postives = 85/126 (67.46%), Query Frame = -1 Query: 272 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 646 V VKT+D+Y LR+F I FT++ NQVKR YAQ+S IR IR+ + EI+ + L L K I E+I +EIE AT I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S E+ G K+ DE Sbjct: 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGEEKGKKVTGFKDE 250
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS2 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1B PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.290e-27 Identity = 63/126 (50.00%), Postives = 86/126 (68.25%), Query Frame = -1 Query: 272 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 646 V VKT+D+Y LR+F I FT++ NQVKR YAQ+S IR IR+ + EI+ + + L L K I E+I +EIE AT I+PLQN+ +RKVK+LK PKFD+G LM +HG+ S ++ G K+ DE Sbjct: 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGEGSGKEKGKKVSGFKDE 250
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_DROGR (40S ribosomal protein S3a OS=Drosophila grimshawi GN=RpS3A PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 7.317e-27 Identity = 55/110 (50.00%), Postives = 79/110 (71.82%), Query Frame = -1 Query: 317 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD 646 V+ KT+D Y LR+FCIGFT + ++TCYAQ SQ+R+IR +M +I+ + + DLK LV K + I ++IEK+ IYPL +V+IRKVK+LK P+FD+ KL+E+H D Sbjct: 128 VEAKTSDGYLLRIFCIGFTSKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGVDLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHND 237
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.439e-24 Identity = 55/124 (44.35%), Postives = 84/124 (67.74%), Query Frame = -1 Query: 281 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 649 +VDVKTTD YTLR F I FTK+ +Q K YAQ ++I+++R K+ E++ + A CDLK +V+K I + IG++ SI+PL +RKVK+LK PK DLG+++E+H + +++ G + RP Sbjct: 124 HVDVKTTDGYTLRFFVIAFTKKQEDQ-KSHAYAQTTRIKKLRAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELHSEGKADEFGEGVPRP 246
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.439e-24 Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = -1 Query: 389 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNV 646 V V+TTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IR+KM EI+ +A+SC L+ L K I E+IGREIEKAT IYPLQNV Sbjct: 125 VTVQTTDHYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASSCTLQQLTSKLIPEVIGREIEKATQGIYPLQNV 210
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 9.889e-24 Identity = 58/124 (46.77%), Postives = 80/124 (64.52%), Query Frame = -1 Query: 281 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERP 649 +VDVKTTD Y LR F I FT +P + YAQ ++I++IR ++ EI+ + ++CDLK +V K I + I ++ KA IYPL FIRKVK+LK PK DL +LME+HG+ S G + RP Sbjct: 125 HVDVKTTDGYLLRFFIITFTPSVPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPLGETFIRKVKVLKRPKADLARLMELHGESKSTAPGETVSRP 248
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_DICDI (40S ribosomal protein S3a OS=Dictyostelium discoideum GN=rps3a PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 3.889e-20 Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = -1 Query: 284 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFI--------------AEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-------SEDVGVKMER 649 +VDVKTTD Y LR+F I FTK+ +Q K+T YA+ S+++ IR+KM +I+ +S DLK +V+ I A + +I SI+P+ NVFIRKVK+LK PK D KL E++ +E+VG +ER Sbjct: 123 FVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELYASSATSTIAPTEEVGTAVER 265
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 3.640e-18 Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = -1 Query: 323 VDVKTTDNYTLRMFCIGFTKRLP---NQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH 646 VD KT D Y +R+F + FTK+ TCYA++SQ+R IRRK+ + +AA + + I E ++IEK T +I+PLQN+ IRKVK+LK PK D K+ E++ Sbjct: 128 VDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A2_TRYCR (40S ribosomal protein S3a-2 OS=Trypanosoma cruzi GN=Tc00.1047053511001.9 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.425e-15 Identity = 41/133 (30.83%), Postives = 72/133 (54.14%), Query Frame = -1 Query: 257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY---SEDVGVKMERPADEPIPEA 646 V+ KT D YTLR+F I FTK+ NQ+ + CYA+ ++ +R ++ ++ + + ++ V I+ + K I PL+++ IRKVK+++ P+FD L+ HG+ +E +E + P EA Sbjct: 127 VEAKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEA 259 The following BLAST results are available for this feature:
BLAST of CB305046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 156
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Sequences
The
following sequences are available for this feature:
EST sequence >CB305046 ID=CB305046; Name=CB305046; organism=Citrus sinensis; type=EST; length=649bpback to top |