CB305046

Overview
NameCB305046
Unique NameCB305046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A1_TRYCR (40S ribosomal protein S3a-1 OS=Trypanosoma cruzi GN=Tc00.1047053503635.59 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.425e-15
Identity = 41/133 (30.83%), Postives = 72/133 (54.14%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY---SEDVGVKMERPADEPIPEA 646
            V+ KT D YTLR+F I FTK+  NQ+ + CYA+   ++ +R ++  ++  + +  ++   V      I+   + K    I PL+++ IRKVK+++ P+FD   L+  HG+    +E     +E   + P  EA
Sbjct:  127 VETKTADGYTLRLFVIAFTKKQSNQLSKNCYAKTRLVKWVRHRITNLIRQRLSKVNINEAVTLLTRNILRDRLAKRCNPIVPLRDLRIRKVKVVRTPRFDAQALLNAHGEIPASAEGEARVVEEAQEAPAAEA 259          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_LEIMA (40S ribosomal protein S3a OS=Leishmania major GN=LmjF35.0400 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 40/131 (30.53%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  254 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 646
            V+VKT D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V    +R  +E +  AP
Sbjct:  128 VEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A2_LEIIN (40S ribosomal protein S3a-2 OS=Leishmania infantum GN=LinJ35.0510 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 40/131 (30.53%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  254 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 646
            V+VKT D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V    +R  +E +  AP
Sbjct:  128 VEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A1_LEIIN (40S ribosomal protein S3a-1 OS=Leishmania infantum GN=LinJ35.0500 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 40/131 (30.53%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  254 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 646
            V+VKT D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V    +R  +E +  AP
Sbjct:  128 VEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAHGTIPASVEAD-QREVEEAVEAAP 257          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_LEIBR (40S ribosomal protein S3a OS=Leishmania braziliensis GN=LbrM34_V2.0430 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.164e-14
Identity = 39/131 (29.77%), Postives = 69/131 (52.67%), Query Frame = -1
Query:  254 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAP 646
            V+V+T D YT+R+F + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      ++   + +    I PL+ + IRKV++++ PKFD   L+  HG     V     R  +E +  AP
Sbjct:  128 VEVRTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRVTKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPIVPLREMRIRKVRVVRTPKFDAQALLNAHGTIPTSVEAD-PREVEEAVEAAP 257          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_ENCCU (40S ribosomal protein S1 OS=Encephalitozoon cuniculi GN=RPS1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 34/95 (35.79%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  359 DVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKA 643
            D+   D    R+F +G T+R P  VK+TCY + S  ++IR+ M +++  + + CD++ +++K   E +G+ IE+    I+PLQN  +RKVK +K+
Sbjct:   78 DIVAKDGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCDVQKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIKS 172          
The following BLAST results are available for this feature:
BLAST of CB305046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
RS3A1_TRYCR6.425e-1530.8340S ribosomal protein S3a-1 OS=Trypanosoma cruzi G... [more]
RS3A_LEIMA8.391e-1530.5340S ribosomal protein S3a OS=Leishmania major GN=L... [more]
RS3A2_LEIIN8.391e-1530.5340S ribosomal protein S3a-2 OS=Leishmania infantum... [more]
RS3A1_LEIIN8.391e-1530.5340S ribosomal protein S3a-1 OS=Leishmania infantum... [more]
RS3A_LEIBR4.164e-1429.7740S ribosomal protein S3a OS=Leishmania braziliens... [more]
RS3A_ENCCU1.212e-1335.7940S ribosomal protein S1 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305046 ID=CB305046; Name=CB305046; organism=Citrus sinensis; type=EST; length=649bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTAGAATAATGTATCTAA
TCCACTGGAATAAAGAATAAGGTAATCATGTTCATACCACAGAAACCGCT
GCAGCCATCTCAAATATCAGCTAGAATAAAATATGTAAACTCAAAACAAA
TTTGAGTTCATCACAAACAAAACTGCCCAAAAATTACTAGATCTGATTGG
TTATAAAGACAAACTACAAAAATTTTCTTTATTCAAGCTCCAATCACTTC
AGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTTCCATCTTTACAC
CAACATCCTCAGAGTAATCACCATGAACCTCCATCAACTTTCCAAGATCA
AACTTAGGAGCTTTCAAGATCTTCACTTTGCGGATGAAAACATTTTGTAA
GGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTCCAATTATTTCAG
CAATGAACTTTTCGACCAAGCCCTTAAGATCACACGATGCTGCCTGAGCA
ATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGCCTG
TGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCTTGGTGAATCCAA
TGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTGACATCCACGTA
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