CB305046

Overview
NameCB305046
Unique NameCB305046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_NEUCR (40S ribosomal protein S1 OS=Neurospora crassa GN=crp-8 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEA 646
            + VKTTD+Y LR+F I FTKR PNQVK+T YA +SQIR IRRKM EI+  +A+SC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+  S++ G K+ER   E + E+
Sbjct:  125 ITVKTTDDYLLRLFAIAFTKRRPNQVKKTTYAASSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMSLHGESGSDEAGQKVEREFKETVLES 255          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 79/131 (60.31%), Postives = 100/131 (76.34%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 646
            V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +A+SC L  L  K I E+IGREIEKAT  IYPLQ+V IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  125 VTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREASSCSLAQLTSKLIPEVIGREIEKATQGIYPLQHVHIRKVKLLKSPKFDLGALLNLHGESTTDDKGQKVEREFKEQVLES 255          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_TALSN (40S ribosomal protein S1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) GN=rps1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 79/131 (60.31%), Postives = 100/131 (76.34%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 646
            V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +AASC L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  125 VTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_PENMQ (40S ribosomal protein S1 OS=Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) GN=rps1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.019e-36
Identity = 79/131 (60.31%), Postives = 99/131 (75.57%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 646
            V VKTTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +AASC L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  125 VTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAGSSQIRAIRKKMTEIIQREAASCTLSQLTTKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLNLHGESTTDDQGHKVEREFKETVLES 255          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_PENCW (40S ribosomal protein S1 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=rps1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.269e-36
Identity = 76/131 (58.02%), Postives = 100/131 (76.34%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKMERPADEPIPEA 646
            + VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+KM EI+  +A++C L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+  ++D G K+ER   E + E+
Sbjct:  125 ITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIIQREASTCTLSQLTHKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESATDDKGQKVEREFKETVLES 255          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_NECH7 (40S ribosomal protein S1 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.269e-36
Identity = 78/130 (60.00%), Postives = 98/130 (75.38%), Query Frame = -1
Query:  260 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPE 646
            V VKTTD+Y +R+F I FTKR PNQ+K+T YA +SQIR IRRKM +I+  +A+SC L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG LM +HG+  ++D G K+ER   E + E
Sbjct:  125 VTVKTTDDYLIRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTDIIQREASSCTLTQLTSKLIPEVIGREIEKSTQGIYPLQNVHIRKVKLLKSPKFDLGALMALHGESGTDDQGQKVEREFKERVLE 254          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_CHAGB (40S ribosomal protein S1 OS=Chaetomium globosum GN=RPS1 PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.269e-36
Identity = 81/131 (61.83%), Postives = 95/131 (72.52%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPEA 646
            V V TTD+Y LR+F I FTKR PNQ+K+T YA  SQIR IRRKM EI+  +A+SC L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG LM +HG+ S D  G K+ER   E + E+
Sbjct:  125 VTVMTTDHYLLRLFAIAFTKRRPNQIKKTTYAATSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMTLHGESSTDEQGQKVEREFREQVLES 255          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_SCLS1 (40S ribosomal protein S1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.964e-36
Identity = 78/130 (60.00%), Postives = 97/130 (74.62%), Query Frame = -1
Query:  260 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 646
            + VKTTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A++C L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G K+ER   E + E
Sbjct:  125 ITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_BOTFB (40S ribosomal protein S1 OS=Botryotinia fuckeliana (strain B05.10) GN=rps1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.964e-36
Identity = 78/130 (60.00%), Postives = 97/130 (74.62%), Query Frame = -1
Query:  260 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 646
            + VKTTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IR+KM EI+  +A++C L  L  K I E+IGREIEKAT  IYPLQNV IRKVK+LKAPKFDLG L+ +HG+ + D  G K+ER   E + E
Sbjct:  125 ITVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRKKMTEIIQREASTCTLTQLTAKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKAPKFDLGALLNLHGESNTDEQGQKVEREFKEKVLE 254          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_MAGGR (40S ribosomal protein S1 OS=Magnaporthe grisea GN=RPS1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.871e-36
Identity = 79/130 (60.77%), Postives = 97/130 (74.62%), Query Frame = -1
Query:  260 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSED-VGVKMERPADEPIPE 646
            V VKTTD+Y LR+F I FTKR PNQ+K+T YA +SQIR IRRKM EI+  +A++C L+ L  K I E+IGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ + D  G K+ER   E + E
Sbjct:  125 VTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGESTTDEQGQKVEREFKERVLE 254          
The following BLAST results are available for this feature:
BLAST of CB305046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
RS3A_NEUCR1.571e-3761.8340S ribosomal protein S1 OS=Neurospora crassa GN=c... [more]
RS3A_EMENI3.501e-3760.3140S ribosomal protein S1 OS=Emericella nidulans GN... [more]
RS3A_TALSN4.572e-3760.3140S ribosomal protein S1 OS=Talaromyces stipitatus... [more]
RS3A_PENMQ1.019e-3660.3140S ribosomal protein S1 OS=Penicillium marneffei ... [more]
RS3A_PENCW2.269e-3658.0240S ribosomal protein S1 OS=Penicillium chrysogenu... [more]
RS3A_NECH72.269e-3660.0040S ribosomal protein S1 OS=Nectria haematococca (... [more]
RS3A_CHAGB2.269e-3661.8340S ribosomal protein S1 OS=Chaetomium globosum GN... [more]
RS3A_SCLS12.964e-3660.0040S ribosomal protein S1 OS=Sclerotinia sclerotior... [more]
RS3A_BOTFB2.964e-3660.0040S ribosomal protein S1 OS=Botryotinia fuckeliana... [more]
RS3A_MAGGR3.871e-3660.7740S ribosomal protein S1 OS=Magnaporthe grisea GN=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305046 ID=CB305046; Name=CB305046; organism=Citrus sinensis; type=EST; length=649bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTAGAATAATGTATCTAA
TCCACTGGAATAAAGAATAAGGTAATCATGTTCATACCACAGAAACCGCT
GCAGCCATCTCAAATATCAGCTAGAATAAAATATGTAAACTCAAAACAAA
TTTGAGTTCATCACAAACAAAACTGCCCAAAAATTACTAGATCTGATTGG
TTATAAAGACAAACTACAAAAATTTTCTTTATTCAAGCTCCAATCACTTC
AGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTTCCATCTTTACAC
CAACATCCTCAGAGTAATCACCATGAACCTCCATCAACTTTCCAAGATCA
AACTTAGGAGCTTTCAAGATCTTCACTTTGCGGATGAAAACATTTTGTAA
GGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTCCAATTATTTCAG
CAATGAACTTTTCGACCAAGCCCTTAAGATCACACGATGCTGCCTGAGCA
ATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGCCTG
TGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCTTGGTGAATCCAA
TGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTGACATCCACGTA
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