CB305046

Overview
NameCB305046
Unique NameCB305046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 72/129 (55.81%), Postives = 96/129 (74.42%), Query Frame = -1
Query:  284 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 649
            +VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:  124 HVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVER 252          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 72/129 (55.81%), Postives = 96/129 (74.42%), Query Frame = -1
Query:  284 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 649
            +VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:  124 HVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVER 252          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 4.280e-35
Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = -1
Query:  284 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-------EDVGVKMER 649
            +VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG+++EKA  SIYPL +VF+RKVK+LK PKF+LGKLME+HG+ S       ++ G K+ER
Sbjct:  124 HVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVER 252          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_SOLSE (40S ribosomal protein S3a OS=Solea senegalensis GN=rps3a PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.589e-35
Identity = 71/131 (54.20%), Postives = 96/131 (73.28%), Query Frame = -1
Query:  284 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 649
            +VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G K+ER
Sbjct:  124 HVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGTGTATKATGDDTGAKVER 254          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_ORYLA (40S ribosomal protein S3a OS=Oryzias latipes GN=rps3a PE=2 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.589e-35
Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = -1
Query:  284 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 649
            +VDVKTTD Y LR+FC+GFTK+  NQV++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G K+ER
Sbjct:  124 HVDVKTTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVER 254          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.300e-35
Identity = 74/134 (55.22%), Postives = 100/134 (74.63%), Query Frame = -1
Query:  257 DVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS----EDVGVKMER-PADEPIPEA 643
            D++TTD Y LR+F IGFT+R  NQVK+T YA++SQI  IR+KM E++  +++SCDL+  V K I E++GREIEK+T  IYPL++VFI KVK+LK PKFD+ KL E+HG  S    EDVG K++     EP+P+A
Sbjct:  125 DIRTTDGYLLRVFAIGFTRRRANQVKKTTYAKSSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKDVFIHKVKVLKRPKFDVNKLYELHGGASVVGAEDVGTKIKSGEFKEPVPQA 258          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 9.534e-35
Identity = 71/129 (55.04%), Postives = 96/129 (74.42%), Query Frame = -1
Query:  284 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 649
            +VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:  124 HVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGAKVER 252          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.534e-35
Identity = 71/129 (55.04%), Postives = 96/129 (74.42%), Query Frame = -1
Query:  284 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 649
            +VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:  124 HVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGTKVER 252          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_SALSA (40S ribosomal protein S3a OS=Salmo salar GN=rps3a PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.245e-34
Identity = 70/131 (53.44%), Postives = 96/131 (73.28%), Query Frame = -1
Query:  284 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YSEDVGVKMER 649
            +VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + +G++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+           +D G K++R
Sbjct:  124 HVDVKTTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSSAAKPSGDDTGAKVDR 254          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.245e-34
Identity = 71/129 (55.04%), Postives = 96/129 (74.42%), Query Frame = -1
Query:  284 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YSEDVGVKMER 649
            +VDVKTTD Y LR+FC+GFTK+  NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLK +V K I + IG++IEKA  SIYPL +V++RKVK+LK PKF+LGKLME+HG+         ++ G K+ER
Sbjct:  124 HVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVER 252          
The following BLAST results are available for this feature:
BLAST of CB305046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
RS3A_RAT4.280e-3555.8140S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE4.280e-3555.8140S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_GECJA4.280e-3555.8140S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_SOLSE5.589e-3554.2040S ribosomal protein S3a OS=Solea senegalensis GN... [more]
RS3A_ORYLA5.589e-3554.9640S ribosomal protein S3a OS=Oryzias latipes GN=rp... [more]
RS3A_MALGO7.300e-3555.2240S ribosomal protein S1 OS=Malassezia globosa (st... [more]
RS3A_XENTR9.534e-3555.0440S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]
RS3A_TAEGU9.534e-3555.0440S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_SALSA1.245e-3453.4440S ribosomal protein S3a OS=Salmo salar GN=rps3a ... [more]
RS3A_EIMTE1.245e-3455.0440S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305046 ID=CB305046; Name=CB305046; organism=Citrus sinensis; type=EST; length=649bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTAGAATAATGTATCTAA
TCCACTGGAATAAAGAATAAGGTAATCATGTTCATACCACAGAAACCGCT
GCAGCCATCTCAAATATCAGCTAGAATAAAATATGTAAACTCAAAACAAA
TTTGAGTTCATCACAAACAAAACTGCCCAAAAATTACTAGATCTGATTGG
TTATAAAGACAAACTACAAAAATTTTCTTTATTCAAGCTCCAATCACTTC
AGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTTCCATCTTTACAC
CAACATCCTCAGAGTAATCACCATGAACCTCCATCAACTTTCCAAGATCA
AACTTAGGAGCTTTCAAGATCTTCACTTTGCGGATGAAAACATTTTGTAA
GGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTCCAATTATTTCAG
CAATGAACTTTTCGACCAAGCCCTTAAGATCACACGATGCTGCCTGAGCA
ATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGCCTG
TGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCTTGGTGAATCCAA
TGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTGACATCCACGTA
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