CB305046

Overview
NameCB305046
Unique NameCB305046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.798e-33
Identity = 70/120 (58.33%), Postives = 94/120 (78.33%), Query Frame = -1
Query:  290 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 646
            V VKT+D+Y LR+F I FTKR PNQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  125 VTVKTSDDYVLRVFAIAFTKRQPNQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_AJECG (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.348e-33
Identity = 76/131 (58.02%), Postives = 99/131 (75.57%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 646
            V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREIEK+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  125 VTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.067e-33
Identity = 76/134 (56.72%), Postives = 95/134 (70.90%), Query Frame = -1
Query:  257 DVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY----SEDVGVKMERPA-DEPIPEA 643
            DVKTTD Y LR+F I FTK+  NQVK+  YA++S IR IR+KM EI+  +A SCDL+  V K I E+IGRE+EKAT  I+PL++V++RKVK+LKAPK DL KL+EVHG      +ED GVK       EP P A
Sbjct:  125 DVKTTDGYLLRVFVIAFTKKRANQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVIGREVEKATQGIFPLKDVYVRKVKVLKAPKDDLNKLLEVHGGAAIAGAEDAGVKARNTEFKEPAPLA 258          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.067e-33
Identity = 72/120 (60.00%), Postives = 93/120 (77.50%), Query Frame = -1
Query:  290 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD-YSEDVGVKM 646
            V VKT D+Y LR+F I FTKR PNQVK+T YAQ+S++R+IR+KM EIM  + ++  L  L +K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG LM +HG+  SE+ G K+
Sbjct:  125 VTVKTADDYYLRVFAIAFTKRQPNQVKKTTYAQSSKLREIRKKMMEIMQREVSNSTLAQLTQKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGNLMSLHGEGASEEKGKKV 244          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_AJECH (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain H143) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 75/131 (57.25%), Postives = 99/131 (75.57%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 646
            V VKTTD+Y LR+F I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I E+IGREI+K+T  IYPLQNV IRKVK+LK+PKFDLG L+ +HG+ S +D G K+ER   E + E+
Sbjct:  125 VTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIDKSTHGIYPLQNVHIRKVKLLKSPKFDLGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.923e-33
Identity = 71/122 (58.20%), Postives = 91/122 (74.59%), Query Frame = -1
Query:  290 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSEDVGVKM 649
            + +VKT+D Y LR+FCI FT+R+ +QVK TCYAQ SQIRQIR+KM EI+ A+A    L+ LV+KFI E IG+EIEKA   I+PLQ+VFIRKVK+L  P FD+ +LME H   D  E+ G K+
Sbjct:  124 HCNVKTSDGYVLRLFCIAFTRRMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.988e-32
Identity = 69/120 (57.50%), Postives = 92/120 (76.67%), Query Frame = -1
Query:  290 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKM 646
            V VKT D+Y LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G K+
Sbjct:  125 VTVKTADDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_THEAN (40S ribosomal protein S3a OS=Theileria annulata GN=TA17795 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32
Identity = 66/117 (56.41%), Postives = 86/117 (73.50%), Query Frame = -1
Query:  299 YVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 649
            + DVKT D Y LRMFC+G+TKR P Q+K TCY ++S++R I +KM  +M  +A++  LK LV+K I E IG+EIEKA  SI+PLQNV +RK+K+LK PKFDL KLME H    E+ G
Sbjct:  124 FADVKTLDGYNLRMFCVGYTKRRPGQLKSTCYVRSSKVRLIHKKMVAVMTNEASNSTLKELVKKVIPESIGKEIEKACKSIFPLQNVLVRKIKVLKKPKFDLTKLMESHNYSGEEEG 240          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A_LODEL (40S ribosomal protein S1 OS=Lodderomyces elongisporus GN=RPS1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.391e-32
Identity = 67/119 (56.30%), Postives = 90/119 (75.63%), Query Frame = -1
Query:  290 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKM 646
            V VKT D+Y LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EI+  + ++  L  L  K I E+I REIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ SE+ G K+
Sbjct:  112 VTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMVEILTREVSNSTLSQLTSKLIPEVISREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGSLLALHGEASEEKGKKV 230          
BLAST of CB305046 vs. ExPASy Swiss-Prot
Match: RS3A2_DEBHA (40S ribosomal protein S1-B OS=Debaryomyces hansenii GN=RPS1B PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.784e-32
Identity = 69/131 (52.67%), Postives = 96/131 (73.28%), Query Frame = -1
Query:  257 VDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEA 646
            V VKT+D+Y LR+F I FTKR  NQ+++T YAQ+S++R++R+KM EIM  + ++C L  L  K I E+IGREIEK+T +I PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G K+     + + EA
Sbjct:  125 VTVKTSDDYVLRIFAIAFTKRQANQIRKTTYAQSSKLREVRKKMIEIMQREVSNCTLAQLTSKLIPEVIGREIEKSTQTILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKVSAGFKDVVLEA 255          
The following BLAST results are available for this feature:
BLAST of CB305046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
RS3A_CANAL1.798e-3358.3340S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_AJECG2.348e-3358.0240S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_USTMA3.067e-3356.7240S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A_PICGU3.067e-3360.0040S ribosomal protein S1 OS=Pichia guilliermondii ... [more]
RS3A_AJECH5.231e-3357.2540S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_CRYHO8.923e-3358.2040S ribosomal protein S3a OS=Cryptosporidium homin... [more]
RS3A_CANTT1.988e-3257.5040S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_THEAN3.391e-3256.4140S ribosomal protein S3a OS=Theileria annulata GN... [more]
RS3A_LODEL3.391e-3256.3040S ribosomal protein S1 OS=Lodderomyces elongispo... [more]
RS3A2_DEBHA5.784e-3252.6740S ribosomal protein S1-B OS=Debaryomyces hanseni... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305046 ID=CB305046; Name=CB305046; organism=Citrus sinensis; type=EST; length=649bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTAGAATAATGTATCTAA
TCCACTGGAATAAAGAATAAGGTAATCATGTTCATACCACAGAAACCGCT
GCAGCCATCTCAAATATCAGCTAGAATAAAATATGTAAACTCAAAACAAA
TTTGAGTTCATCACAAACAAAACTGCCCAAAAATTACTAGATCTGATTGG
TTATAAAGACAAACTACAAAAATTTTCTTTATTCAAGCTCCAATCACTTC
AGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCCTTTCCATCTTTACAC
CAACATCCTCAGAGTAATCACCATGAACCTCCATCAACTTTCCAAGATCA
AACTTAGGAGCTTTCAAGATCTTCACTTTGCGGATGAAAACATTTTGTAA
GGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTCTTCCAATTATTTCAG
CAATGAACTTTTCGACCAAGCCCTTAAGATCACACGATGCTGCCTGAGCA
ATCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGCCTG
TGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTCTCTTGGTGAATCCAA
TGCAGAACATCCTCAATGTGTAGTTATCAGTGGTCTTGACATCCACGTA
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