CB305049

Overview
NameCB305049
Unique NameCB305049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:236..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.734e-46
Identity = 88/101 (87.13%), Postives = 96/101 (95.05%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGN KDDLRLPTDE LL+ +KDGFAEGKDLV++VMS+MG+EQI ALKDIGPK
Sbjct:   59 HFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

HSP 2 Score: 24.2534 bits (51), Expect = 1.734e-46
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.837e-46
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = -3 
Query:  277 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPKS 582
            HFV IDIF+ KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGN KDDLRLPTD+TLL Q+K GF EGKDLVL+VMS+MG+EQICA+KDIG K+
Sbjct:   59 HFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT 160

HSP 2 Score: 24.2534 bits (51), Expect = 3.837e-46
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.443e-45
Identity = 83/101 (82.18%), Postives = 94/101 (93.07%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+GKKLEDIVPSSHNCD+PHVNRT+YQLIDISEDGFVSLLT +GN KDDLRLPTDETL+ Q+K+GF  GKDLV+TV S+MG+EQICALKD+GPK
Sbjct:   60 HFVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160

HSP 2 Score: 24.2534 bits (51), Expect = 1.443e-45
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   52 GKHGHAKC 59
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.451e-45
Identity = 86/103 (83.50%), Postives = 98/103 (95.15%), Query Frame = -3 
Query:  277 HFVGIDIFSGKKLEDI-VPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPKS 582
            HFV IDIF+ KKLE++ VPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGN KDDL+LPTD++LLTQ+KDGFAEGKDLV++VMS+MG+EQICALKDIG K+
Sbjct:   59 HFVAIDIFTSKKLEEVYVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGKN 161

HSP 2 Score: 24.2534 bits (51), Expect = 2.451e-45
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.194e-45
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = -3 
Query:  277 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPKS 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE+GN KDDLRLPTDE+LL Q+KDGF EGKDLV++VMS+MG+EQI A+KDIG K+
Sbjct:   59 HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTKN 160

HSP 2 Score: 24.2534 bits (51), Expect = 3.194e-45
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.069e-45
Identity = 85/102 (83.33%), Postives = 95/102 (93.14%), Query Frame = -3 
Query:  277 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPKS 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE+GN KDDLRLPTDE LL Q+KDGF EGKDLV++VMS+MG+EQI A+KD+G K+
Sbjct:   59 HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTKN 160

HSP 2 Score: 24.2534 bits (51), Expect = 7.069e-45
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.073e-45
Identity = 82/101 (81.19%), Postives = 95/101 (94.06%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+ KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLT+NG+ KDDL+LPTDE LLTQLK+GF EGKD+V++VMS+MG+EQ+CALK++GPK
Sbjct:   58 HFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

HSP 2 Score: 24.2534 bits (51), Expect = 7.073e-45
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   50 GKHGHAKC 57
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.895e-43
Identity = 81/101 (80.20%), Postives = 93/101 (92.08%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+ KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLT+NG+ KDDL+LP D+TLL Q+K GF +GKDLV++VMS+MG+EQI ALKDIGPK
Sbjct:   58 HFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

HSP 2 Score: 24.2534 bits (51), Expect = 4.895e-43
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   50 GKHGHAKC 57
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A_DIACA (Eukaryotic translation initiation factor 5A OS=Dianthus caryophyllus PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.809e-40
Identity = 73/98 (74.49%), Postives = 89/98 (90.82%), Query Frame = -3 
Query:  289 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDI 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNR DYQL+DI+EDGFVSLLT++G+ KDDL+LP DE L+ Q+K+GF  GKDL+L+VM +MG+EQICA+KD+
Sbjct:   59 HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRVDYQLLDITEDGFVSLLTDSGDTKDDLKLPADEALVKQMKEGFEAGKDLILSVMCAMGEEQICAVKDV 156

HSP 2 Score: 24.2534 bits (51), Expect = 2.809e-40
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_ARATH (Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.101e-40
Identity = 74/99 (74.75%), Postives = 89/99 (89.90%), Query Frame = -3 
Query:  286 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIG 582
            HFV IDIF+ KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLT++G  KDDL+LPTD+ L  Q++ GF EGKD+V++VMSSMG+EQICA+K++G
Sbjct:   58 HFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

HSP 2 Score: 24.2534 bits (51), Expect = 8.101e-40
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   50 GKHGHAKC 57
The following BLAST results are available for this feature:
BLAST of CB305049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A3_SOLLC1.734e-4687.13Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A4_SOLLC3.837e-4685.29Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A_MAIZE1.443e-4582.18Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A1_MEDSA2.451e-4583.50Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A3_SOLTU3.194e-4584.31Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A2_SOLLC7.069e-4583.33Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A3_ARATH7.073e-4581.19Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A1_ARATH4.895e-4380.20Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A_DIACA2.809e-4074.49Eukaryotic translation initiation factor 5A OS=Dia... [more]
IF5A2_ARATH8.101e-4074.75Eukaryotic translation initiation factor 5A-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305049 ID=CB305049; Name=CB305049; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCAATAACACCCCAATCATATAT
AAATAACAAAGACGATTTCTTTCTAACATTATAATTCATTAGAGAAATTG
AACACCATAAATTTTTTAGCCGCCAATCAAAAGAACTACATATTCCAGGC
AGCTTGCAATTCTCACCACAAAACAAAGACGCTACAAATATTAAAGGCAA
ACTCTAGATGATTAAAATATTTTTCCAAAAAACAGATGCAACCAGACACA
GAAGATAATCACATATCGCGCAACTACGACTTTGGGCCAATATCCTTGAG
GGCACAGATCTGCTCCTTGCCCATTGAAGACATGACAGTCAAAACCAAGT
CCTTCCCCTCAGCAAAACCGTCCTTGAGCTGGGTCAGCAGAGTCTCATCG
GTTGGGAGCCTCAGATCATCCTTGGGGTTCCCATTTTCAGTCAGCAAACT
CACAAATCCATCCTCAGAAATATCAATCAACTGATAGTCGGTACGGTTGA
CATGGGGAACATCACAGTTATGAGAAGAGGGGACAATATCTTCCAGCTTC
TTTCCACTGAAGATATCAATTCCAACAAAGTGCACTTAGCATGACCGTGC
TTTCC
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