CB305049

Overview
NameCB305049
Unique NameCB305049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:236..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A_SPOFR (Eukaryotic translation initiation factor 5A OS=Spodoptera frugiperda GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.049e-25
Identity = 55/97 (56.70%), Postives = 75/97 (77.32%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D  L TQL+  F  GK+L+ TV+ S G+E + A+K
Sbjct:   58 VHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          

HSP 2 Score: 21.557 bits (44), Expect = 1.049e-25
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = -1
Query:  573 GKHGHAKCTLL 605
            GKHGHAK  L+
Sbjct:   51 GKHGHAKVHLV 61          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A_SPOEX (Eukaryotic translation initiation factor 5A OS=Spodoptera exigua GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.049e-25
Identity = 55/97 (56.70%), Postives = 75/97 (77.32%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D  L TQL+  F  GK+L+ TV+ S G+E + A+K
Sbjct:   58 VHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          

HSP 2 Score: 21.557 bits (44), Expect = 1.049e-25
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = -1
Query:  573 GKHGHAKCTLL 605
            GKHGHAK  L+
Sbjct:   51 GKHGHAKVHLV 61          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_SCHPO (Eukaryotic translation initiation factor 5A-2 OS=Schizosaccharomyces pombe GN=tif51b PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.501e-23
Identity = 51/98 (52.04%), Postives = 76/98 (77.55%), Query Frame = -3
Query:  292 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKD 585
            VH V +DIF+G+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G  KDD+RLP  E L  ++++GF EGKDL++TV+S+MG+E   A +D
Sbjct:   58 VHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFEEGKDLIITVVSAMGEEIALACRD 153          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_SCHPO (Eukaryotic translation initiation factor 5A-1 OS=Schizosaccharomyces pombe GN=tif51a PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.621e-22
Identity = 50/98 (51.02%), Postives = 76/98 (77.55%), Query Frame = -3
Query:  292 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKD 585
            VH V +DIF+G+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G  KDD+RLP  E L  ++++GF EG+DL++TV+S+MG+E   A +D
Sbjct:   58 VHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFDEGRDLIITVVSAMGEETALACRD 153          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A_CANAL (Eukaryotic translation initiation factor 5A OS=Candida albicans GN=ANB1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.610e-22
Identity = 50/98 (51.02%), Postives = 78/98 (79.59%), Query Frame = -3
Query:  292 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKD 585
            VH V IDIF+GKKLED+ PS+HN +VP+V+R ++QL+DI +DG++SL+T +G+ KDD+++P  E L  +L+  F EGKDL++T++S+MG+E   + K+
Sbjct:   56 VHLVAIDIFTGKKLEDLSPSTHNMEVPNVSRQEFQLLDI-DDGYLSLMTADGDTKDDVKVPEGE-LGDKLQSEFDEGKDLIVTIISAMGEEAAISYKE 151          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A_DROME (Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.715e-22
Identity = 53/97 (54.64%), Postives = 72/97 (74.23%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIFS KK EDI PS+HN DVP+V R D QLI IS+D F++L+TE+G+ ++DL++P  E L  QL+  F  GKDL+ TV+ + G+E + A+K
Sbjct:   57 VHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGE-LGEQLRLDFDSGKDLLCTVLKACGEECVIAIK 152          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_YEAST (Eukaryotic translation initiation factor 5A-2 OS=Saccharomyces cerevisiae GN=HYP2 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.792e-21
Identity = 51/98 (52.04%), Postives = 73/98 (74.49%), Query Frame = -3
Query:  292 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKD 585
            VH V IDIF+GKKLED+ PS+HN +VP V R +YQL+DI +DGF+SL+  +G+ KDD++ P  E L   L+  F EGKDL++T++S+MG+E   + K+
Sbjct:   57 VHLVAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEGE-LGDSLQTAFDEGKDLMVTIISAMGEEAAISFKE 152          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_YEAST (Eukaryotic translation initiation factor 5A-1 OS=Saccharomyces cerevisiae GN=HYP1 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.056e-21
Identity = 51/103 (49.51%), Postives = 77/103 (74.76%), Query Frame = -3
Query:  277 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPKS 585
            VH V +DIF+GKKLED+ PS+HN +VP V R++YQL+DI +DG++SL+T +G  KDD++ P  E L   ++  F EGKDL++T++S+MG+E   + K+  P+S
Sbjct:   57 VHLVTLDIFTGKKLEDLSPSTHNLEVPFVKRSEYQLLDI-DDGYLSLMTMDGETKDDVKAPEGE-LGDSMQAAFDEGKDLMVTIISAMGEEAAISFKE-APRS 156          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_PONAB (Eukaryotic translation initiation factor 5A-2 OS=Pongo abelii GN=EIF5A2 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 50/97 (51.55%), Postives = 71/97 (73.20%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +++  +  G+D+ ++VM +M +E   A+K
Sbjct:   56 VHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_MOUSE (Eukaryotic translation initiation factor 5A-2 OS=Mus musculus GN=Eif5a2 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 50/97 (51.55%), Postives = 71/97 (73.20%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +++  +  G+D+ ++VM +M +E   A+K
Sbjct:   56 VHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
The following BLAST results are available for this feature:
BLAST of CB305049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A_SPOFR1.049e-2556.70Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A_SPOEX1.049e-2556.70Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A2_SCHPO9.501e-2352.04Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_SCHPO1.621e-2251.02Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_CANAL3.610e-2251.02Eukaryotic translation initiation factor 5A OS=Can... [more]
IF5A_DROME4.715e-2254.64Eukaryotic translation initiation factor 5A OS=Dro... [more]
IF5A2_YEAST1.792e-2152.04Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_YEAST3.056e-2149.51Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A2_PONAB3.379e-2051.55Eukaryotic translation initiation factor 5A-2 OS=P... [more]
IF5A2_MOUSE3.379e-2051.55Eukaryotic translation initiation factor 5A-2 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305049 ID=CB305049; Name=CB305049; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCAATAACACCCCAATCATATAT
AAATAACAAAGACGATTTCTTTCTAACATTATAATTCATTAGAGAAATTG
AACACCATAAATTTTTTAGCCGCCAATCAAAAGAACTACATATTCCAGGC
AGCTTGCAATTCTCACCACAAAACAAAGACGCTACAAATATTAAAGGCAA
ACTCTAGATGATTAAAATATTTTTCCAAAAAACAGATGCAACCAGACACA
GAAGATAATCACATATCGCGCAACTACGACTTTGGGCCAATATCCTTGAG
GGCACAGATCTGCTCCTTGCCCATTGAAGACATGACAGTCAAAACCAAGT
CCTTCCCCTCAGCAAAACCGTCCTTGAGCTGGGTCAGCAGAGTCTCATCG
GTTGGGAGCCTCAGATCATCCTTGGGGTTCCCATTTTCAGTCAGCAAACT
CACAAATCCATCCTCAGAAATATCAATCAACTGATAGTCGGTACGGTTGA
CATGGGGAACATCACAGTTATGAGAAGAGGGGACAATATCTTCCAGCTTC
TTTCCACTGAAGATATCAATTCCAACAAAGTGCACTTAGCATGACCGTGC
TTTCC
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