CB305049

Overview
NameCB305049
Unique NameCB305049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:236..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 50/97 (51.55%), Postives = 71/97 (73.20%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +++  +  G+D+ ++VM +M +E   A+K
Sbjct:   56 VHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 4.225e-20
Identity = 49/97 (50.52%), Postives = 72/97 (74.23%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE+G  ++DL+LP  + L  +++  F   +D+ ++V+S+M +E   A+K
Sbjct:   56 VHLVGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLPEGD-LGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          

HSP 2 Score: 21.557 bits (44), Expect = 4.225e-20
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = -1
Query:  573 GKHGHAKCTLL 605
            GKHGHAK  L+
Sbjct:   49 GKHGHAKVHLV 59          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.528e-20
Identity = 47/97 (48.45%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M +E   A+K
Sbjct:   56 VHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.190e-19
Identity = 47/97 (48.45%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M +E   A+K
Sbjct:   56 VHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.190e-19
Identity = 47/97 (48.45%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M +E   A+K
Sbjct:   56 VHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.190e-19
Identity = 47/97 (48.45%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M +E   A+K
Sbjct:   56 VHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.190e-19
Identity = 47/97 (48.45%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  + L  +++  +  G+++++TV+S+M +E   A+K
Sbjct:   56 VHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.880e-19
Identity = 47/97 (48.45%), Postives = 72/97 (74.23%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G   +DLRLP  + L  +++  +  G+++++TV+S+M +E   A+K
Sbjct:   56 VHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLPEGD-LGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.204e-18
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = -3
Query:  280 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 585
            VH V IDIF+GKKLED+ PS+HN DVP+V RTDYQ   I ED F+ L+  NG  K D+++P  E L  +++    EGKD  + V ++MG+E    +K+   K
Sbjct:   63 VHLVAIDIFTGKKLEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRDVKMPEGE-LAKRIEKLEEEGKDFFVGVQTAMGEEAAIDVKEASNK 162          

HSP 2 Score: 21.9422 bits (45), Expect = 6.204e-18
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = -1
Query:  567 GKHGHAKCTLLEL 605
            GKHGHAK  L+ +
Sbjct:   56 GKHGHAKVHLVAI 68          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.017e-16
Identity = 42/97 (43.30%), Postives = 70/97 (72.16%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALK 585
            V+   IDIF+GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  ++     EGK+ +++V+S++GKE + ++K
Sbjct:   61 VNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
The following BLAST results are available for this feature:
BLAST of CB305049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A2_HUMAN3.379e-2051.55Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A2_CHICK4.225e-2050.52Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A1_RABIT7.528e-2048.45Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A1_RAT2.190e-1948.45Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_MOUSE2.190e-1948.45Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN2.190e-1948.45Eukaryotic translation initiation factor 5A-1 OS=H... [more]
IF5A1_BOVIN2.190e-1948.45Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5AL_HUMAN4.880e-1948.45Eukaryotic translation initiation factor 5A-1-like... [more]
IF5A_NEUCR6.204e-1847.06Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5A_DICDI1.017e-1643.30Eukaryotic translation initiation factor 5A OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305049 ID=CB305049; Name=CB305049; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCAATAACACCCCAATCATATAT
AAATAACAAAGACGATTTCTTTCTAACATTATAATTCATTAGAGAAATTG
AACACCATAAATTTTTTAGCCGCCAATCAAAAGAACTACATATTCCAGGC
AGCTTGCAATTCTCACCACAAAACAAAGACGCTACAAATATTAAAGGCAA
ACTCTAGATGATTAAAATATTTTTCCAAAAAACAGATGCAACCAGACACA
GAAGATAATCACATATCGCGCAACTACGACTTTGGGCCAATATCCTTGAG
GGCACAGATCTGCTCCTTGCCCATTGAAGACATGACAGTCAAAACCAAGT
CCTTCCCCTCAGCAAAACCGTCCTTGAGCTGGGTCAGCAGAGTCTCATCG
GTTGGGAGCCTCAGATCATCCTTGGGGTTCCCATTTTCAGTCAGCAAACT
CACAAATCCATCCTCAGAAATATCAATCAACTGATAGTCGGTACGGTTGA
CATGGGGAACATCACAGTTATGAGAAGAGGGGACAATATCTTCCAGCTTC
TTTCCACTGAAGATATCAATTCCAACAAAGTGCACTTAGCATGACCGTGC
TTTCC
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