CB305049

Overview
NameCB305049
Unique NameCB305049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:236..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.866e-16
Identity = 42/81 (51.85%), Postives = 61/81 (75.31%), Query Frame = -3
Query:  343 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLV 585
            VH VGIDIF+GKK EDI PS+HN DVP++ R D+QLI I +DGF+SLL ++G  ++DLRLP  E L  +++  +  G++++
Sbjct:   56 VHLVGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE-LGREIEQKYDCGEEII 134          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.251e-14
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL-TENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLT-VMSSMGKEQICALK 585
            VH V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  Q++D + + +  VL  V+S++G+E I   K
Sbjct:   60 VHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWK 156          

HSP 2 Score: 21.1718 bits (43), Expect = 1.251e-14
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = -1
Query:  567 GKHGHAKCTLLEL 605
            GKHGHAK  ++ +
Sbjct:   53 GKHGHAKVHMVAI 65          
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.808e-12
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  295 VHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLL-TENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLT-VMSSMGKEQICALK 585
            VH V IDIF+ KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P  + L   +++   + +  VL  V+++ G+E I   K
Sbjct:   60 VHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGD-LGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          

HSP 2 Score: 21.1718 bits (43), Expect = 1.808e-12
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = -1
Query:  567 GKHGHAKCTLLEL 605
            GKHGHAK  ++ +
Sbjct:   53 GKHGHAKVHMVAI 65          
The following BLAST results are available for this feature:
BLAST of CB305049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A1_CHICK3.866e-1651.85Eukaryotic translation initiation factor 5A-1 OS=G... [more]
IF5A2_CAEEL1.251e-1448.48Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL1.808e-1245.45Eukaryotic translation initiation factor 5A-1 OS=C... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305049 ID=CB305049; Name=CB305049; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCAATAACACCCCAATCATATAT
AAATAACAAAGACGATTTCTTTCTAACATTATAATTCATTAGAGAAATTG
AACACCATAAATTTTTTAGCCGCCAATCAAAAGAACTACATATTCCAGGC
AGCTTGCAATTCTCACCACAAAACAAAGACGCTACAAATATTAAAGGCAA
ACTCTAGATGATTAAAATATTTTTCCAAAAAACAGATGCAACCAGACACA
GAAGATAATCACATATCGCGCAACTACGACTTTGGGCCAATATCCTTGAG
GGCACAGATCTGCTCCTTGCCCATTGAAGACATGACAGTCAAAACCAAGT
CCTTCCCCTCAGCAAAACCGTCCTTGAGCTGGGTCAGCAGAGTCTCATCG
GTTGGGAGCCTCAGATCATCCTTGGGGTTCCCATTTTCAGTCAGCAAACT
CACAAATCCATCCTCAGAAATATCAATCAACTGATAGTCGGTACGGTTGA
CATGGGGAACATCACAGTTATGAGAAGAGGGGACAATATCTTCCAGCTTC
TTTCCACTGAAGATATCAATTCCAACAAAGTGCACTTAGCATGACCGTGC
TTTCC
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