CB305052

Overview
NameCB305052
Unique NameCB305052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2549 contig Csv1_Contig2549:594..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.708e-33
Identity = 73/128 (57.03%), Postives = 93/128 (72.66%), Query Frame = -1
Query:  184 SPTSLGSVKGIS--KTFGLKCSP---NFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 552
            +P SL S+   +    FGLK          +MA YK+K I P+GE  E E  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGSVDQSD SFLDD Q+  G++LTC +YPTSD  I++HKEE++
Sbjct:   21 APISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGEL-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.913e-33
Identity = 66/96 (68.75%), Postives = 80/96 (83.33%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P+GE  E E  +D YILD AEE G+DLPYSCRAG+CS+CAGKLVSG +DQSD SFLDD+QME G++LTC +YP SD VI++HKEEEL
Sbjct:    1 ATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.913e-33
Identity = 66/98 (67.35%), Postives = 82/98 (83.67%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA +K+ LI   +G  +  +  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD  IQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTSNTIDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+K I P+GE+ E E  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSG VDQSD SFLDD+Q+  G++LTC +YPTSD  I++HKEEEL
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.804e-33
Identity = 71/123 (57.72%), Postives = 93/123 (75.61%), Query Frame = -1
Query:  184 TSLGSVKGISKT-FGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 546
            TSL ++  + +  FGLK   N + + MA YK+KLI P+G   EFE  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +GSVDQSDG+FLD++Q  AG++LTC++YP  D  I++HKEEEL
Sbjct:   21 TSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPI-EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.489e-33
Identity = 63/96 (65.62%), Postives = 82/96 (85.42%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+K I P+GE+ E E  +D Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGSVDQSD SFLDD+Q+  G++LTC +YPTSD  I++H+EE++
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 6.489e-33
Identity = 62/95 (65.26%), Postives = 80/95 (84.21%), Query Frame = -1
Query:  184 VYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 468
            VYK+ L+  +G E   +  +D+YILD AE+ G+DLPYSCRAGACSTCAGK+VSG+VDQSD SFLDD+Q+E GY+LTC++YPTSD  I++HKEE+L
Sbjct:    4 VYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 6.489e-33
Identity = 64/98 (65.31%), Postives = 82/98 (83.67%), Query Frame = -1
Query:  184 MAVYKIKLI-GPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MAVYK++LI   +G +   E  +D+YILDAAEE G+DLPYSCRAGACSTCAGK+V G+VDQSD SFLDD Q+ AGY+LTC++YP+SDC +++H+EE L
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.107e-32
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ LI   +G     +  +D YILDAAEEAG+DLPYSCRAGACSTCAG + SG++DQSD SFLDD+Q+EAGY+LTC++YPTSDC I++H+EE L
Sbjct:    1 MATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ L+ P G E   +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
The following BLAST results are available for this feature:
BLAST of CB305052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_ARATH1.708e-3357.03Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER_HORVU2.913e-3368.75Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER1_ANAVT2.913e-3367.35Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER_BRANA3.804e-3367.71Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER1_SOLLC3.804e-3357.72Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER3_RAPSA6.489e-3365.63Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER1_NOSMU6.489e-3365.26Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER1_CYAPA6.489e-3365.31Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_SPIPL1.107e-3265.31Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_THEVL1.888e-3263.92Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305052 ID=CB305052; Name=CB305052; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGAAAAATTACAGATTCC
ATTGCACCAGACAACACGCTGAAATCTAAAAAATATTGTAGGCCCATGAG
AAACCTTATCAGCATACTCAGGCACTTGATCACAGTTCATACTTGAAAAA
CCCTAAACCAACTGACAGCAAAGGCACTCAGCAAAGCTCTTCTTCCTTGT
GAGACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGA
TAACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTC
AACTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGC
GGCAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATG
TACTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCCTTAGGTCCAAT
CAGCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATT
TCAGGCCAAAGGTCTTGGAGATGCCCTTAACAGATCCAAGTGAGGTTGGG
CTCTT
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