CB305052

Overview
NameCB305052
Unique NameCB305052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2549 contig Csv1_Contig2549:594..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ L+ P G E   +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ L+ P G E   +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 63/96 (65.62%), Postives = 80/96 (83.33%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+ L  P G++   E  +D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD+QM+ G++LTC++YPTSDC I +HKEE+L
Sbjct:    1 ATYKVTLKTPSGDQ-TIECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 2.466e-32
Identity = 64/97 (65.98%), Postives = 80/97 (82.47%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+KL G +G +   +  +DQYILDAAEE G+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+  G++LTC++YPTSDC I +H+EE L
Sbjct:    1 MATYKVKLSG-EGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.466e-32
Identity = 66/96 (68.75%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  184 VYKIKLIGPK-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 468
            +YKI+L+  K G +       DQYILDAAEE GVDLPYSCRAGACSTCAGKLV GSVDQSD SFLD+ Q+  G++LTC++YPTSDCVIQ+H+EE L
Sbjct:    1 MYKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.220e-32
Identity = 67/123 (54.47%), Postives = 90/123 (73.17%), Query Frame = -1
Query:  184 PTSLGSVKGISKTFGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 549
            PT++G        FGLK     + + MA YK+ LI  +     F+  +D Y+LD AEE G+DLPYSCRAG+CS+CAGK+V+GSVDQSD SFLDD+Q+EAG++LTC +YP++D  I++HKEEEL
Sbjct:   27 PTNMGQA-----LFGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.220e-32
Identity = 64/96 (66.67%), Postives = 80/96 (83.33%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KLI P G + EFE  +D YIL+ AEE G+D+PYSCRAG+CS+CAGKLV+GSVDQSD SFLDD Q+E G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ASYKVKLITPDGPQ-EFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.220e-32
Identity = 67/97 (69.07%), Postives = 84/97 (86.60%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILD-AAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+ LI P+G++ EFE  +D YILD AAEE G DLPYSCRAG+CS+CAGK+ +GSVDQSDGS+LDD+QMEAG++LTC++YPTSD  I++HKEEEL
Sbjct:    1 ATYKVTLITPEGKQ-EFEVPDDVYILDHAAEEVG-DLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.206e-32
Identity = 69/132 (52.27%), Postives = 94/132 (71.21%), Query Frame = -1
Query:  184 TSLGSVKGISKTFGLKCSPNFQASM-----------AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 546
            T L S +  + +F L+ +P    +M           A Y +KLI P+GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSGS+DQSD SFLDD+Q+  G++LTC++YPTSD VI++HKE++L
Sbjct:    3 TVLSSPRAPAFSFSLRAAPATTVAMTRGASSRLRAQATYNVKLITPEGEV-ELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKEDDL 133          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.206e-32
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+ L+ P G +   E  +D+YILDAAEE G+DLPYSCRAGACS+CAGK+ SGSVDQSD SFL+D QME G++LTCI+YPT D  I++HKEEEL
Sbjct:    1 ATYKVTLVTPSGSQ-VIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CB305052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_THEEB1.888e-3263.92Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN1.888e-3263.92Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER_SCEQU1.888e-3265.63Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER_GUITH2.466e-3265.98Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER2_CYACA2.466e-3268.75Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_SILPR3.220e-3254.47Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_SAMNI3.220e-3266.67Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER_ARCLA3.220e-3269.07Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER5_MAIZE4.206e-3252.27Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER2_SPIOL4.206e-3266.67Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305052 ID=CB305052; Name=CB305052; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGAAAAATTACAGATTCC
ATTGCACCAGACAACACGCTGAAATCTAAAAAATATTGTAGGCCCATGAG
AAACCTTATCAGCATACTCAGGCACTTGATCACAGTTCATACTTGAAAAA
CCCTAAACCAACTGACAGCAAAGGCACTCAGCAAAGCTCTTCTTCCTTGT
GAGACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGA
TAACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTC
AACTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGC
GGCAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATG
TACTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCCTTAGGTCCAAT
CAGCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATT
TCAGGCCAAAGGTCTTGGAGATGCCCTTAACAGATCCAAGTGAGGTTGGG
CTCTT
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