CB305052

Overview
NameCB305052
Unique NameCB305052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2549 contig Csv1_Contig2549:594..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD +I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = -1
Query:  184 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 465
            +K+KL+ P G + EFE  +D YILD AEE G++LPYSCRAG+CS+CAGKLV G +DQSD SFLDD Q+E G++LTC +YP SD VI++HKEEEL
Sbjct:    2 FKVKLLTPDGPK-EFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEEL 94          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.353e-30
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KLI P G   EF+  +D YILD AEEAG DLPYSCRAG+CS+CAGK+  G+VDQ+DG+FLDD+Q+E G++LTC++YP SD  I++HKE EL
Sbjct:    1 ASYKVKLITPDGPI-EFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.767e-30
Identity = 63/98 (64.29%), Postives = 78/98 (79.59%), Query Frame = -1
Query:  184 MAVYKIKLI-GPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YKI L+   +G +  F   ED YILDAAEE G++LPYSCRAGACSTCAGK+  G+VDQ+D SFLDD+Q+ AGY+LTCI+YP+SDC I +H E+EL
Sbjct:    1 MADYKIHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQEL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.767e-30
Identity = 62/115 (53.91%), Postives = 85/115 (73.91%), Query Frame = -1
Query:  184 ISKTFGLKC-SPNFQASMAVYKIKLI-GPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 522
            ++K FGLK  S      MA YK+  + G  G E+  E  +++Y LDAAE AG+DLPYSCRAGACS+CAG + +G VDQSD SFLDD+Q++ G++LTC++YP SDC+I +H+EE +
Sbjct:   31 VAKAFGLKSRSMGRLTCMATYKVTFLDGETGAENVXECSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.767e-30
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.308e-30
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G   EF   +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.308e-30
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G   EF   +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.308e-30
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = -1
Query:  184 AVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YKI L+   +G +   E  +DQYILDAAEE G+DLPYSCRAGACSTCAGKL+ G VDQSD SFLDD+Q++AG++LTC++YPTS+  I +H+EE L
Sbjct:    1 ASYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESL 97          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.308e-30
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A Y +KLI P GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSG +DQSD SFLDD+Q+ AG++LTC +YP SD VI++HKE++L
Sbjct:   44 ATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
The following BLAST results are available for this feature:
BLAST of CB305052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SCOJA1.353e-3062.50Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_LEUGL1.353e-3064.89Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]
FER_CAPAA1.353e-3063.54Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]
FER_PORYE1.767e-3064.29Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]
FER_PHYPA1.767e-3053.91Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER_DATAR1.767e-3062.50Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER_DATST2.308e-3062.50Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU2.308e-3062.50Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FER3_CYACA2.308e-3063.92Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_ORYSJ2.308e-3063.54Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305052 ID=CB305052; Name=CB305052; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGAAAAATTACAGATTCC
ATTGCACCAGACAACACGCTGAAATCTAAAAAATATTGTAGGCCCATGAG
AAACCTTATCAGCATACTCAGGCACTTGATCACAGTTCATACTTGAAAAA
CCCTAAACCAACTGACAGCAAAGGCACTCAGCAAAGCTCTTCTTCCTTGT
GAGACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGA
TAACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTC
AACTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGC
GGCAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATG
TACTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCCTTAGGTCCAAT
CAGCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATT
TCAGGCCAAAGGTCTTGGAGATGCCCTTAACAGATCCAAGTGAGGTTGGG
CTCTT
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