CB305052

Overview
NameCB305052
Unique NameCB305052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2549 contig Csv1_Contig2549:594..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.770e-30
Identity = 58/96 (60.42%), Postives = 76/96 (79.17%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+  + P G +       D Y+LDAAE+ G+DLPYSCRAGACS+CAGK+ +GSV+Q DGSFLD+ QMEAG++LTC++YPTSD  I++HKEE+L
Sbjct:    2 ASYKVTFVTPSGTK-TITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KLI P+G   EF   +D YILD+AEE G DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD+Q+  G++LTC++YP S+  I++HKE++L
Sbjct:    1 ATYKVKLITPEGPV-EFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.145e-29
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KLI P G   EF   +D YILD AEE G DLPYSCRAGACS+CAGK+V GSVDQSD SFLDD+Q+  G++LTC++YP S+  I++HKEE L
Sbjct:    1 ASYKVKLITPDGPI-EFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEAL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.496e-29
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = -1
Query:  184 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 465
            YK+ L  P GEE   E  ED YILDAAEEAG+DLPYSCRAGACS+CAGK+ SG VDQSD SFLDD QM  G++LTC++YPTSD  I +H+E  L
Sbjct:    1 YKVTLKTPSGEE-TIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.496e-29
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+ L    G E   +  ED +ILD AEE G+D+P+SCR+G+CSTCAGK+  G+VDQS+ +FLDD+QME GY+LTC++YPTSDC I +H+EEE+
Sbjct:    1 ASYKVTLKLDDGSEAVIDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEM 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = -1
Query:  184 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 465
            +K+ L  P G+    + ++D+YILDAAEEAG+ LPYSCRAGACS+CAGK+ +G VDQSD SFLDD+QM+ GY+LTCI+YPTSD  I +H+EE L
Sbjct:    2 FKVTLNTPTGQS-VIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 57/96 (59.38%), Postives = 77/96 (80.21%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+  + P G  +      D Y+LDAAEE+G+DLPYSCRAGACS+CAGK+ +G+V+Q DGSFL++ QMEAG++LTC++YPTSD  I++HKEE+L
Sbjct:    2 ASYKVTFVTPSGT-NTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 57/95 (60.00%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  184 YKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 465
            Y + L+   K      +  +DQ+ILDAAEE G++LPYSCRAGACSTCAGK++SG++DQS+ SFLDD+QM AG+LLTC++YPTSDC +Q+H E++L
Sbjct:    3 YSVTLVNEEKNINAVIKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 56/93 (60.22%), Postives = 73/93 (78.49%), Query Frame = -1
Query:  184 KIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 462
            K+KLI P+GEE E E  ED  IL++AE AG++LPYSCR+G C TC GKLVSG VDQS GSFL++ Q++ GY+LTCI+ P  DCV+ +HK+ +L
Sbjct:   55 KVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.333e-29
Identity = 58/96 (60.42%), Postives = 77/96 (80.21%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G   EF   +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEE+L
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDL 95          
The following BLAST results are available for this feature:
BLAST of CB305052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_PHYES8.770e-3060.42Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER_SOLLY1.145e-2961.46Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_SOLLS1.145e-2964.58Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_CHLFU1.496e-2967.02Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER_BRYMA1.496e-2958.33Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER_MARPO1.954e-2962.77Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER2_PHYAM1.954e-2959.38Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER_BUMFI2.552e-2960.00Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER4_ARATH2.552e-2960.22Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER1_HYONI3.333e-2960.42Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305052 ID=CB305052; Name=CB305052; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGAAAAATTACAGATTCC
ATTGCACCAGACAACACGCTGAAATCTAAAAAATATTGTAGGCCCATGAG
AAACCTTATCAGCATACTCAGGCACTTGATCACAGTTCATACTTGAAAAA
CCCTAAACCAACTGACAGCAAAGGCACTCAGCAAAGCTCTTCTTCCTTGT
GAGACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGA
TAACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTC
AACTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGC
GGCAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATG
TACTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCCTTAGGTCCAAT
CAGCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATT
TCAGGCCAAAGGTCTTGGAGATGCCCTTAACAGATCCAAGTGAGGTTGGG
CTCTT
back to top