CB305052

Overview
NameCB305052
Unique NameCB305052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2549 contig Csv1_Contig2549:594..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.352e-29
Identity = 58/96 (60.42%), Postives = 77/96 (80.21%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+KL+ P G   EF+  +D YILD AEE G +LPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+Q+  G++LTC++YP SD  I++HKEE L
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEAL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.685e-29
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = -1
Query:  184 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 465
            YK+ L  P G++   E   D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G++DQSD SFLDD+Q   G++LTC++Y TSDC I +H+EE L
Sbjct:    2 YKVTLKTPSGDQ-TIEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESL 94          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.685e-29
Identity = 54/96 (56.25%), Postives = 77/96 (80.21%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A YK+ L+ P G +   +  +D Y+LDAAEEAG+DLPYSCRAG+CS+C GK+ +G+VDQ D SFLDD+Q+EAG++LTC+++P  D  I++HKEE++
Sbjct:    1 ATYKVTLVTPSGTQ-TIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.696e-29
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            A++K+K + P GE    E  +D++ILDA EEAG+DLPYSCRAGACS+C GKL+ G VDQS+ SFLDD+QM  G++LTC++YP  D  I++H EE+L
Sbjct:    1 AIFKVKFLTPDGER-TIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.696e-29
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = -1
Query:  184 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 465
            YK  L  P GE    +  E   ILDAAEEAG DLP+SCRAGACS+C GK+VSGSVDQS+GSFLDD QME G++LTCI+ P SD VI++HKEEEL
Sbjct:    2 YKTVLKTPSGE-FTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_ODOSI (Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.160e-28
Identity = 57/101 (56.44%), Postives = 78/101 (77.23%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEA----QEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ L+    EEH+ +A     +D ++LDAAEE G++LPYSCRAGACSTCAGK+  G +DQS+ +FLDD+Q+ AG++LTCI+YP SDC +  H+E+EL
Sbjct:    1 MATYKVTLLS---EEHDIDATIDCNDDVFLLDAAEEQGIELPYSCRAGACSTCAGKVTEGDIDQSEQTFLDDDQVGAGFVLTCIAYPKSDCTVLVHQEDEL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.160e-28
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = -1
Query:  184 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 465
            YK  L  P GE    +  E   ILDAAEEAG DLP+SCRAGACS+C GK+VSGSVD+S+GSFLDD QME G++LTCI+ P SD VI++HKEEEL
Sbjct:    2 YKTVLKTPSGE-FTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.388e-27
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = -1
Query:  184 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 465
            Y + L  P G E E E  E  Y+LD+AE+ G+DLPYSCRAGACSTCAG +  G+VDQSD SFLDD+Q+   ++LTC++YPTSDC I++H+EE+L
Sbjct:    4 YTVTLSTPGGVE-EIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.388e-27
Identity = 54/98 (55.10%), Postives = 78/98 (79.59%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK++L    +G +   E  +D+YILDAAEEAG+DLP+SCR+G+CS+C G L  G+VDQSD +FLDD+Q+ AG +LTC++YPTS+C I++H+E+ +
Sbjct:    1 MATYKVRLFNAAEGLDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAI 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.022e-26
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = -1
Query:  184 YKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 465
            +K+ L  P G++  FE   D YILD AEE G++LPYSCRAG+CS+CAGK+++GS+DQSD +FLDD+Q   GY LTC++YPTSD  I++H E EL
Sbjct:    1 FKVTLDTPDGKK-SFECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCESEL 93          
The following BLAST results are available for this feature:
BLAST of CB305052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_LYCCN4.352e-2960.42Ferredoxin OS=Lycium chinense PE=1 SV=1[more]
FER2_DUNSA5.685e-2961.70Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER1_PHYAM5.685e-2956.25Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_GLEJA9.696e-2958.33Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]
FER1_EQUTE9.696e-2967.02Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER_ODOSI2.160e-2856.44Ferredoxin OS=Odontella sinensis GN=petF PE=3 SV=2[more]
FER1_EQUAR2.160e-2865.96Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER_RHOPL2.388e-2759.57Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER2_NOSMU2.388e-2755.10Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER_PERBI2.022e-2658.51Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305052 ID=CB305052; Name=CB305052; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGAAAAATTACAGATTCC
ATTGCACCAGACAACACGCTGAAATCTAAAAAATATTGTAGGCCCATGAG
AAACCTTATCAGCATACTCAGGCACTTGATCACAGTTCATACTTGAAAAA
CCCTAAACCAACTGACAGCAAAGGCACTCAGCAAAGCTCTTCTTCCTTGT
GAGACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGA
TAACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTC
AACTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGC
GGCAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATG
TACTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCCTTAGGTCCAAT
CAGCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATT
TCAGGCCAAAGGTCTTGGAGATGCCCTTAACAGATCCAAGTGAGGTTGGG
CTCTT
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