CB305054

Overview
NameCB305054
Unique NameCB305054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = -3
Query:  147 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFIL 461
            STG  +A E++ T  LV  VF++TD ++++            IG +V + HL  I  TG  +NPARS G A+I  K   +   W+FWVGP +GA +A+    F+L
Sbjct:  140 STGQAVAVELLLTLQLVLCVFASTDSRQTSGSPATM------IGISVALGHLIGIHFTGCSMNPARSFGPAIIIGK---FTVHWVFWVGPLMGALLASLIYNFVL 235          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = -3
Query:  168 STGVGLA----AEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 461
            S GVG+      E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L   P  G  +NPA + G +++      W   W+FWVGP +GAA+AA
Sbjct:  136 SPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIFWVGPLLGAALAA 231          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = -3
Query:  147 LADGYSTGVGLAAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFIL 476
            LA G      +  E   TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR  G A++      W   W++W+GPF+GA +A    ++++
Sbjct:  140 LASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRG----HVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFVGAGLAGLLYEYLV 243          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = -3
Query:  171 GYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 467
            G S   G+  E++ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV       +   W++WVGP +G  +A
Sbjct:  135 GISELEGVVFEVVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGD---FAGNWVYWVGPLVGGGLA 227          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQPZ_BRAJA (Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.652e-11
Identity = 37/97 (38.14%), Postives = 52/97 (53.61%), Query Frame = -3
Query:  174 YSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAI 464
            YS       E++ T + ++ +  AT  +  A        APL IG A+ M+HL +IP+T T +NPARS G A ++    A    WLFWV P IG A+
Sbjct:  129 YSMMACFLTEVVMTMMFLFIIMGATHGRAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPA-LFVGGWAMAQLWLFWVAPLIGGAL 218          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = -3
Query:  171 GLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 449
            G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV       +   W++WVGP IG  +A
Sbjct:  142 GVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV---AAADFAGNWVYWVGPLIGGGLA 228          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 35/98 (35.71%), Postives = 52/98 (53.06%), Query Frame = -3
Query:  144 EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILR 437
            E + TF+LV+ V + +DP R      +   APL +G A+   HL  I ++G  +NPARS G AV+      W   W++WVGP  G  +A    + I +
Sbjct:  142 EALITFILVFVVKAVSDPGRQ----DIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQG---VWTYHWVYWVGPIAGGLLAGIIYRLIFK 232          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  168 GYSTGVGLAA-EIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 467
            G  TG G +  E +  FVLVYTVF+A+DP+R      +P+ + P+ IGF      LA  P +G  +NPA + G+A++Y   K   +Q ++WVGP +G A AA
Sbjct:  139 GEMTGFGASVLEGVLAFVLVYTVFTASDPRRG-----LPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVYGSFK---NQAVYWVGPLLGGATAA 232          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  171 ADGYSTGVGL----AAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 473
            A G S GVG+      EI+ TF LVYTV++ A DPK  +    +  +AP+ IGF V    LA    +G  +NPA + G AV+      W + W++W GP +G  IA
Sbjct:  132 AFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLVGGGIA 230          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  168 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 467
            GYS    L  EII T   +  +  +T  +       VPV  AP+ IG A+ ++HL +IP+T T +NPARS G A ++    A    WLFW+ P +G AI A
Sbjct:  126 GYSLLSALLIEIILTAFFLVVILGSTHGR-------VPVGFAPVAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPILGGAIGA 218          
The following BLAST results are available for this feature:
BLAST of CB305054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AQP6_HUMAN9.684e-1238.10Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
TIPA_PHAVU1.265e-1141.75Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP31_ORYSJ1.265e-1135.14Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP21_MAIZE1.265e-1140.00Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
AQPZ_BRAJA1.652e-1138.14Aquaporin Z OS=Bradyrhizobium japonicum GN=aqpZ PE... [more]
TIP22_MAIZE2.157e-1142.55Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
AQP_DROME2.818e-1135.71Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
TIP51_ARATH4.806e-1141.18Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP11_ARATH4.806e-1139.62Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
AQPZ1_AGRT54.806e-1139.60Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305054 ID=CB305054; Name=CB305054; organism=Citrus sinensis; type=EST; length=478bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGATTTTAAATCATTAAC
CCCATGAAGATGTGGATAATCCACTTGTCGAAGAAACTAAAATCAGACAC
GGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAAG
ATGAATTGGGGGTAGGAAGCTGCAATTGCTGCACCAATGAAGGGTCCAAC
CCAGAAGAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACAG
CGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATTGGGATT
GTGGCCAAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGTGCCAA
AACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGCCGAGA
AGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCAATCCA
ACGCCGGTGCTGTACCCATCGGCCAGCT
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