CB305054

Overview
NameCB305054
Unique NameCB305054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.131e-52
Identity = 99/114 (86.84%), Postives = 104/114 (91.23%), Query Frame = -3
Query:  135 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRAGA 476
            LA GYS G GLAAEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSLGAAV+YN  KAW DQW+FWVGPFIGAAIAA Y Q +LRA A
Sbjct:  160 LAAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 273          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.250e-51
Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = -3
Query:  120 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRAGAVKALG 476
            +A GY+ G    AE+IGTFVLVYTVFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYNK + WDD W+FWVGPF+GA  AA+Y Q++LRA A+KALG
Sbjct:  156 VALGYNKGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALG 274          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 3.079e-50
Identity = 93/112 (83.04%), Postives = 102/112 (91.07%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD AWDD W+FWVGPFIGAA+AA Y Q ++RA
Sbjct:  168 VAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRA 279          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 4.022e-50
Identity = 92/112 (82.14%), Postives = 102/112 (91.07%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD AWDD W+FWVGPFIGAA+AA Y Q ++RA
Sbjct:  169 VAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 6.860e-50
Identity = 92/112 (82.14%), Postives = 102/112 (91.07%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA Y Q ++RA
Sbjct:  169 VAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 5.807e-49
Identity = 89/112 (79.46%), Postives = 102/112 (91.07%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD AW+D W+FWVGPF+GAA+AA Y Q I+RA
Sbjct:  171 VASGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRA 282          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 9.906e-49
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+I+NKD AWDD W+FWVGPFIGAA+AA Y   ++RA
Sbjct:  168 IAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRA 279          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.294e-48
Identity = 89/112 (79.46%), Postives = 102/112 (91.07%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN+D AW+D W+FWVGPFIGAA+AA Y Q I+RA
Sbjct:  171 VAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRA 282          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.690e-48
Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN+D AW D W+FWVGPFIGAA+AA Y Q I+RA
Sbjct:  174 VAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRA 285          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.690e-48
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA Y   ++RA
Sbjct:  168 VAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
The following BLAST results are available for this feature:
BLAST of CB305054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
PIP25_ORYSJ1.131e-5286.84Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP1_ATRCA1.250e-5178.99Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP13_ARATH3.079e-5083.04Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP15_ARATH4.022e-5082.14Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH6.860e-5082.14Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP11_ORYSJ5.807e-4979.46Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_ARATH9.906e-4980.36Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP12_MAIZE1.294e-4879.46Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE1.690e-4879.46Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP11_VICFA1.690e-4880.36Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305054 ID=CB305054; Name=CB305054; organism=Citrus sinensis; type=EST; length=478bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGATTTTAAATCATTAAC
CCCATGAAGATGTGGATAATCCACTTGTCGAAGAAACTAAAATCAGACAC
GGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAAG
ATGAATTGGGGGTAGGAAGCTGCAATTGCTGCACCAATGAAGGGTCCAAC
CCAGAAGAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACAG
CGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATTGGGATT
GTGGCCAAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGTGCCAA
AACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGCCGAGA
AGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCAATCCA
ACGCCGGTGCTGTACCCATCGGCCAGCT
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