CB305054

Overview
NameCB305054
Unique NameCB305054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7528 contig Csv1_Contig7528:632..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.690e-48
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA Y   ++RA
Sbjct:  168 VAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 2.882e-48
Identity = 88/112 (78.57%), Postives = 101/112 (90.18%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN+  AWDD W+FWVGPFIGAA+AA Y Q ++RA
Sbjct:  170 VAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRA 281          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 4.162e-47
Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEI+GTF+LVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+++NK   W+D W+FWVGPFIGAA+AA Y Q ++RA
Sbjct:  172 VAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRA 283          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.435e-47
Identity = 88/109 (80.73%), Postives = 98/109 (89.91%), Query Frame = -3
Query:  141 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 467
            GY+ G GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN + AW+D W+FWVGP IGAA+AA Y Q I+RA
Sbjct:  172 GYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRA 280          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.435e-47
Identity = 87/109 (79.82%), Postives = 98/109 (89.91%), Query Frame = -3
Query:  141 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 467
            GY+ G GL AEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA++YN+  AW+D W+FWVGPFIGAA+AA Y   I+RA
Sbjct:  173 GYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRA 281          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 4.601e-46
Identity = 86/118 (72.88%), Postives = 100/118 (84.75%), Query Frame = -3
Query:  123 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRAGAVKAL 476
            ++DGYS    L AEI+GTF+LVYTVFSATDPKR+ARDS +PVL PLPIGFAVF+VHLATIPITGTGINPARSLGAAV+YN+  AW D W+FWVGP IGA +AA+Y + +LR  A KAL
Sbjct:  163 VSDGYSAAGALGAEIVGTFILVYTVFSATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKAL 280          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 4.601e-46
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = -3
Query:  141 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 467
            GY+ G GL AEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA++YN+  AW D W+FWVGPFIGAA+AA Y   ++RA
Sbjct:  173 GYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRA 281          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 7.849e-46
Identity = 87/112 (77.68%), Postives = 98/112 (87.50%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            +A GY+ G GL AEI+GTF+LVYTVFSATD KR ARDSHVP+LAPLPIGFAVF+VHLAT+ ITGTGINPARSLGAAVIYN+  AW D W+FWVGPFIGAA+AA Y Q I+RA
Sbjct:  169 VAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRA 280          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.525e-44
Identity = 83/112 (74.11%), Postives = 95/112 (84.82%), Query Frame = -3
Query:  141 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRA 476
            ++ GY+ G GL AE++GTFVLVYTVFSATD KR+ARDSHVP LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IY+    W   W+FWVGPF GAA+AA Y Q +LRA
Sbjct:  176 VSPGYTKGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRA 287          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.809e-42
Identity = 85/119 (71.43%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  126 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVI--YNKDKAWDDQWLFWVGPFIGAAIAASYPQFILRAGAVKA 476
            LA GYS G G+ AE++GTFVLVYTVFSATDPKR ARDSHVPVLAPLPIG AV +VHLATIPITGTGINPARSLG A++      KAW   W+FWVGPF GAA A  Y  +ILR  A KA
Sbjct:  151 LAAGYSAGAGVVAEMVGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKA 269          
The following BLAST results are available for this feature:
BLAST of CB305054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
PIP11_ARATH1.690e-4880.36Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP12_ORYSJ2.882e-4878.57Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP2_PEA4.162e-4776.79Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP1_SOLLC5.435e-4780.73Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP15_MAIZE5.435e-4779.82Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP27_ORYSJ4.601e-4672.88Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP13_ORYSJ4.601e-4677.98Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP11_MAIZE7.849e-4677.68Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP16_MAIZE2.525e-4474.11Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP28_ORYSJ1.809e-4271.43Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305054 ID=CB305054; Name=CB305054; organism=Citrus sinensis; type=EST; length=478bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGATTTTAAATCATTAAC
CCCATGAAGATGTGGATAATCCACTTGTCGAAGAAACTAAAATCAGACAC
GGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAAG
ATGAATTGGGGGTAGGAAGCTGCAATTGCTGCACCAATGAAGGGTCCAAC
CCAGAAGAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACAG
CGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATTGGGATT
GTGGCCAAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGTGCCAA
AACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGCCGAGA
AGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCAATCCA
ACGCCGGTGCTGTACCCATCGGCCAGCT
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