CB305054

Overview
NameCB305054
Unique NameCB305054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -3
Query:  150 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFI 461
            + G GL  E+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARS G AVI      W++ W++WVGP IGA +A +  +++
Sbjct:  158 TAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 254          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.481e-16
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = -3
Query:  150 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFI 461
            + G GL  E+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARS G AVI      W++ W++WVGP IGA +A    +++
Sbjct:  155 TAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.481e-16
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = -3
Query:  150 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFI 461
            + G GL  E+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARS G AVI      W++ W++WVGP IGA +A    +++
Sbjct:  155 TAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = -3
Query:  150 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFI 461
            S G GL  E+I TF LV+T+F++ D KR+     +     L IG +V + HL  I  TG  +NPARS G AVI      W++ W++WVGP IGA +A    +++
Sbjct:  155 SAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.463e-15
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  147 LADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFIL 476
            +A G S   GL  EII TF LVY V+S A DPKR +    + ++APL IG  V    L   P  G  +NPAR+ G A++  +   W + W++WVGPFIG A+AA   ++++
Sbjct:  143 VASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALVGWR---WSNHWIYWVGPFIGGALAALIYEYMI 246          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.216e-15
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  147 LADGYSTGVGLAAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFIL 476
            LA G     GL  EII TF LVY V+S   DPKR +    + ++APL IG  V    L   P +G  +NPAR+ G A++  +   W D W++WVGPFIG+A+AA   ++++
Sbjct:  143 LASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWR---WHDHWIYWVGPFIGSALAALIYEYMV 246          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.216e-15
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = -3
Query:  150 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFI 461
            + G GL  E+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARS G AVI      W + W++WVGP +GA +A +  +++
Sbjct:  155 TAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WANHWIYWVGPIMGAVLAGALYEYV 251          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.165e-15
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = -3
Query:  144 STGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFILR 461
            + G  +  E + TF+LV  V   +DP R+     +   APL +G ++   HL  I +TG  +NPARS G AV+ N    W D W++WVGP +GA +AA   +F+ +
Sbjct:  140 TVGQAVLIEALITFILVVVVKGVSDPGRT----DIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQN---MWIDHWVYWVGPIVGAIVAALLYKFVFK 238          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.222e-14
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = -3
Query:  165 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAS 467
            GY+ G G  +E++ T + +  +  ATD +  A        AP+ IG A+ ++HL +IP+T T +NPARS G A ++    A    WLFWV P IGAAI  +
Sbjct:  128 GYTLGAGFVSEVVMTAMFLVVIMGATDARAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALQQLWLFWVAPLIGAAIGGA 221          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 78.5666 bits (192), Expect = 1.596e-14
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = -3
Query:  165 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAS 476
            +A G STG G+  E + TF+LV+ V    D +R+     V   APL IG ++   HLA I  TG  +NPARS G AV+      + D W++WVGP +G  +A +
Sbjct:  134 IAPGLSTGQGVLIEALITFMLVFVVHGVCDNRRT----DVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPAVVMGN---YTDLWVYWVGPIVGGIVAGA 230          
The following BLAST results are available for this feature:
BLAST of CB305054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AQP4_NOTAL4.962e-1641.35Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_HUMAN6.481e-1641.35Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_DIPME6.481e-1641.35Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_BOVIN1.444e-1541.35Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
TIP32_ARATH2.463e-1542.34Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP31_ARATH3.216e-1542.34Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
AQP4_MOUSE3.216e-1540.38Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP_HAEIX7.165e-1537.74Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQPZ_PSEPK1.222e-1439.60Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
AQP_ANOGA1.596e-1440.38Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305054 ID=CB305054; Name=CB305054; organism=Citrus sinensis; type=EST; length=478bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGATTTTAAATCATTAAC
CCCATGAAGATGTGGATAATCCACTTGTCGAAGAAACTAAAATCAGACAC
GGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAAG
ATGAATTGGGGGTAGGAAGCTGCAATTGCTGCACCAATGAAGGGTCCAAC
CCAGAAGAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACAG
CGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATTGGGATT
GTGGCCAAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGTGCCAA
AACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGCCGAGA
AGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCAATCCA
ACGCCGGTGCTGTACCCATCGGCCAGCT
back to top