CB305054

Overview
NameCB305054
Unique NameCB305054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  171 LADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 476
            +A G     G+  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV+      +   W++WVGP +G A+A
Sbjct:  133 VAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLVGGALA 228          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = -3
Query:  168 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 467
            GYS   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A ++    A    WLFWV P +GA I A
Sbjct:  126 GYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTWVNPARSTGVA-LFADTAALSQLWLFWVAPLVGAVIGA 218          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 41/100 (41.00%), Postives = 55/100 (55.00%), Query Frame = -3
Query:  171 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 467
            GYS    L  E++ T   +  +  +T        S VPV  AP+ IG  + ++HL +IP+T T +NPARS G A ++  D A    WLFWV P IGA IA
Sbjct:  126 GYSLTAALVTEVVMTAFFLLIILGSTH-------SRVPVGFAPIAIGLGLTLIHLVSIPVTNTSVNPARSTGQA-LFVGDWAISQLWLFWVAPLIGAVIA 217          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQPZ_GLOVI (Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.706e-13
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  162 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASY 467
            GY+    L  E++ TF+ +  +  +TD +R+ +       AP+ IG ++ ++HL +IP+T T +NPARS G A ++  D A  + WLFW+ P +GAA+A  +
Sbjct:  129 GYTLLACLVCEVVMTFMFLMIILGSTD-RRAPKG-----FAPIAIGLSLTLIHLISIPVTNTSVNPARSTGPA-LFVGDWAIAELWLFWLAPIVGAALAGLF 223          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.706e-13
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = -3
Query:  168 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 476
            L +  + G  +  E+I TF L   +F++TD +R++     PV +P L IG +V + HL  I  TG  +NPARS G AV+ N+       W+FWVGP +GA +AA
Sbjct:  122 LNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAA 218          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  147 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFIL 476
            L +  + G  +  E+  T  LV  +F++TD +RS           L IGF+V + HL  I  TG  +NPARSL  AV+  K   +DD W+FW+GP +GA I +    ++L
Sbjct:  121 LHNNATAGQAVTVELFLTMQLVLCIFASTDERRSDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAVIGSLLYNYLL 223          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = -3
Query:  147 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFIL 476
            L +  + G  +  E+  T  LV  +F++TD +R       P L+   IGF+V + HL  I  TG  +NPARSL  A++  K   +DD W+FW+GP +GA +A+    ++L
Sbjct:  121 LNNNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVG-TPALS---IGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = -3
Query:  147 LADGYSTGVGLAAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAASYPQFIL 476
            LA G   G  +  E + TF  VY  ++   DPKR     H+  +APL +GF +    LA  P  G G+NPAR  G A++      W   W++W+GPF+GA +A    +++L
Sbjct:  144 LASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKRG----HLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLGAGLAGLVYEYLL 247          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  168 STGVG----LAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 461
            S GVG    +  E++ TF LVYTV++ A DPK+      + V+AP+ IGF V    LA     G  +NPA S G AV+      W++ W++WVGP  GAAIAA
Sbjct:  136 SAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKG----DLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWENHWVYWVGPLAGAAIAA 231          
BLAST of CB305054 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVY (Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 38/100 (38.00%), Postives = 53/100 (53.00%), Query Frame = -3
Query:  168 GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 467
            GYS    L  EI+   + +  +  ATD +           AP+ IG  + ++HL +IP+T T +NPARS G A +Y  D A    WLFWV P +GA + A
Sbjct:  127 GYSLTSALVTEIVMAMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVA-LYVGDWATAQLWLFWVAPILGALLGA 219          
The following BLAST results are available for this feature:
BLAST of CB305054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
TIP22_ARATH5.135e-1340.78Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
AQPZ_BRUME5.135e-1340.00Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
AQPZ1_RHIME5.135e-1341.00Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
AQPZ_GLOVI6.706e-1336.27Aquaporin Z OS=Gloeobacter violaceus GN=aqpZ PE=3 ... [more]
AQP5_HUMAN6.706e-1340.38Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
AQP2_MOUSE8.759e-1337.27Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
AQP2_BOVIN8.759e-1336.36Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
TIP32_MAIZE1.144e-1236.04Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP12_MAIZE1.144e-1243.69Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
AQPZ_VIBVY1.144e-1238.00Aquaporin Z OS=Vibrio vulnificus (strain YJ016) GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305054 ID=CB305054; Name=CB305054; organism=Citrus sinensis; type=EST; length=478bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGATTTTAAATCATTAAC
CCCATGAAGATGTGGATAATCCACTTGTCGAAGAAACTAAAATCAGACAC
GGGATTGGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAAG
ATGAATTGGGGGTAGGAAGCTGCAATTGCTGCACCAATGAAGGGTCCAAC
CCAGAAGAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACAG
CGGCCCCGAGACTCCTTGCTGGGTTAATGCCAGTGCCAGTGATTGGGATT
GTGGCCAAGTGTACCATGAACACAGCAAATCCAATGGGGAGCGGTGCCAA
AACGGGAACGTGGGAGTCTCTGGCGCTTCTCTTGGGATCAGTGGCCGAGA
AGACAGTGTAAACCAAGACAAAGGTGCCGATGATCTCGGCGGCCAATCCA
ACGCCGGTGCTGTACCCATCGGCCAGCT
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