CB305055

Overview
NameCB305055
Unique NameCB305055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            D VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   24 DRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            D +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   24 DRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            D +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   24 DRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            D +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   24 DRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_CAEBR (40S ribosomal protein S27a OS=Caenorhabditis briggsae GN=ubl-1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.635e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = -3
Query:  164 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVYQKA 325
            LAVL++YKVD++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKVDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_CAEEL (40S ribosomal protein S27a OS=Caenorhabditis elegans GN=ubl-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.359e-13
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = -3
Query:  164 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVYQKA 325
            LAVL++YK+D++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.612e-13
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            + +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:   24 ERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27B_SCHPO (40S ribosomal protein S27b OS=Schizosaccharomyces pombe GN=ubi5 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = -3
Query:  182 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLT 325
            LAVL++YKV+D G V+RLR+ECPN  CGA  FMANH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_SCHPO (40S ribosomal protein S27a OS=Schizosaccharomyces pombe GN=ubi3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.255e-12
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = -3
Query:  182 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLT 325
            LAVL++YKV+D G V+RLR+ECPN  CGA  FMANH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = -3
Query:  179 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTY 325
            LAVL +YKVD  GKV +LR+EC N  CGAG F+ANH DR YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72          
The following BLAST results are available for this feature:
BLAST of CB305055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RUB1_DESAN3.303e-1366.04NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ4.314e-1364.15NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ4.314e-1364.15NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH4.314e-1364.15NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RS27A_CAEBR5.635e-1359.2640S ribosomal protein S27a OS=Caenorhabditis brigg... [more]
RS27A_CAEEL7.359e-1357.4140S ribosomal protein S27a OS=Caenorhabditis elega... [more]
NEDD8_CAEEL9.612e-1362.26NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
RS27B_SCHPO1.255e-1268.7540S ribosomal protein S27b OS=Schizosaccharomyces ... [more]
RS27A_SCHPO1.255e-1268.7540S ribosomal protein S27a OS=Schizosaccharomyces ... [more]
RS37_YEAST1.639e-1265.3140S ribosomal protein S31 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305055 ID=CB305055; Name=CB305055; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACGCTCAAGCAAACAAGT
ATATAGTCAAACAAAATTACGAAAGAGTCATAATTTTTGAACCACAAAAA
CCATAGTAATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCG
ATCAATCACCGCCAGCCTTCTGGTAAACATAGGTGAGTCCACACTTGCCG
CAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGGGGCCGGCTCCACACTC
AGCATTCGGACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGA
CCTTGTAAAACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTG
ATCTTTTTCGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACC
ACGGAGACGGAGGACGAGGTGGAGTGTTGACTCCTTTTGGATGTTGTAGT
CGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGC
TGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATT
GTCGA
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