CB305055

Overview
NameCB305055
Unique NameCB305055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305055_ssr332 microsatellite CB305055_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133 contig Csv1_Contig10133:113..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CB305055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
UBIQ_MACFA1.338e-2296.23Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU1.338e-2296.23Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN1.338e-2296.23Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE1.338e-2296.23Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO1.338e-2296.23Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_GEOCY1.338e-2296.23Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_FELCA1.338e-2296.23Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_ENCCU1.338e-2296.23Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_EIMBO1.338e-2296.23Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_DROME1.338e-2296.23Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305055 ID=CB305055; Name=CB305055; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACGCTCAAGCAAACAAGT
ATATAGTCAAACAAAATTACGAAAGAGTCATAATTTTTGAACCACAAAAA
CCATAGTAATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCG
ATCAATCACCGCCAGCCTTCTGGTAAACATAGGTGAGTCCACACTTGCCG
CAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGGGGCCGGCTCCACACTC
AGCATTCGGACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGA
CCTTGTAAAACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTG
ATCTTTTTCGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACC
ACGGAGACGGAGGACGAGGTGGAGTGTTGACTCCTTTTGGATGTTGTAGT
CGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGC
TGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATT
GTCGA
back to top