CB305055

Overview
NameCB305055
Unique NameCB305055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305055_ssr332 microsatellite CB305055_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133 contig Csv1_Contig10133:113..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.748e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.748e-22
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            DNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 DNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.748e-22
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            DNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 DNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.282e-22
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.282e-22
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.893e-22
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.893e-22
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = -3 
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            +NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   24 ENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_HORVU (40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.893e-22
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = -3 
Query:  164 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVY-QKA 325
            LAVLQFYKVDD+ GKV RLRKECPNA+CGAG FMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.641e-22
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = -3 
Query:  164 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVY-QKA 325
            LAVLQFYKVDD+ GKV RLRKECPN ECGAG FMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79
[Close]
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.932e-21
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = -3 
Query:  164 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVY-QKA 325
            LAVLQFYKVDD+ GKV RLRKECPN +CGAG FMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79
The following BLAST results are available for this feature:
BLAST of CB305055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
UBIQ_TRYBB1.748e-2296.23Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_PHYIN1.748e-2296.23Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_NEUCR1.748e-2296.23Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_SHEEP2.282e-2294.34Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_ACACA2.282e-2296.23Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_LEIMA3.893e-2294.34Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_AGLNE3.893e-2294.34Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
RS27A_HORVU3.893e-2289.2940S ribosomal protein S27a OS=Hordeum vulgare GN=M... [more]
RS27A_MAIZE6.641e-2289.2940S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=... [more]
RS27A_ORYSJ1.932e-2187.5040S ribosomal protein S27a OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305055 ID=CB305055; Name=CB305055; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACGCTCAAGCAAACAAGT
ATATAGTCAAACAAAATTACGAAAGAGTCATAATTTTTGAACCACAAAAA
CCATAGTAATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCG
ATCAATCACCGCCAGCCTTCTGGTAAACATAGGTGAGTCCACACTTGCCG
CAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGGGGCCGGCTCCACACTC
AGCATTCGGACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGA
CCTTGTAAAACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTG
ATCTTTTTCGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACC
ACGGAGACGGAGGACGAGGTGGAGTGTTGACTCCTTTTGGATGTTGTAGT
CGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGC
TGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATT
GTCGA
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