CB305055

Overview
NameCB305055
Unique NameCB305055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.454e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = -3
Query:  167 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVYQK 325
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.598e-18
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = -3
Query:  395 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 547
            VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   26 VKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.598e-18
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = -3
Query:  395 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 550
            ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   25 DLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.925e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = -3
Query:  167 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVYQK 325
            LAVL++YKVD++GK+ RLR+ECP   CGAG FMA H DRHYCGKC LT+V+ K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_NEUCR (40S ribosomal protein S27a OS=Neurospora crassa GN=ubi-3 PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.213e-15
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = -3
Query:  164 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVYQKA 325
            LAVL++YKVD  GK++RLR+ECPN  CGAG FMA   DR YCG+C LTYV++K+
Sbjct:   24 LAVLKYYKVDSDGKIERLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYVFEKS 77          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_KLULA (40S ribosomal protein S27a OS=Kluyveromyces lactis GN=ubi3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.096e-14
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = -3
Query:  167 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVYQK 325
            LAVL +YKVDD GKV +LRKECPN  CG G F+ANH DR YCGKC  T+  QK
Sbjct:   24 LAVLNYYKVDDEGKVAKLRKECPN--CGPGIFLANHGDRFYCGKCHSTFATQK 74          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_PLUXY (40S ribosomal protein S27a OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = -3
Query:  170 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVYQ 325
            LAVL+FYKVD++GK+ RLR+EC + +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTSEQCGAGVFMAVMEDRHYCGKCHRTMVFK 75          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_SPOFR (40S ribosomal protein S27a OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  170 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVYQ 325
            LAVL+FYKVD++GK+ RLR+EC   +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: RS27A_MANSE (40S ribosomal protein S27a OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.483e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = -3
Query:  170 LAVLQFYKVDDSGKVQRLRKECPNAECGAGPFMANHFDRHYCGKCGLTYVYQ 325
            LAVL+FYKVD++GK+ RLR+EC   +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CB305055 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = -3
Query:  395 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 553
            D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:   24 DRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CB305055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RS27A_MOUSE4.454e-1869.8140S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]
UBIL_NPVOP7.598e-1884.31Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC7.598e-1880.77Ubiquitin-like protein OS=Autographa californica n... [more]
RS27A_DROME4.925e-1767.9240S ribosomal protein S27a OS=Drosophila melanogas... [more]
RS27A_NEUCR1.213e-1564.8140S ribosomal protein S27a OS=Neurospora crassa GN... [more]
RS27A_KLULA5.096e-1467.9240S ribosomal protein S27a OS=Kluyveromyces lactis... [more]
RS27A_PLUXY1.135e-1363.4640S ribosomal protein S27a OS=Plutella xylostella ... [more]
RS27A_SPOFR1.483e-1363.4640S ribosomal protein S27a OS=Spodoptera frugiperd... [more]
RS27A_MANSE1.483e-1363.4640S ribosomal protein S27a OS=Manduca sexta PE=3 S... [more]
NEDD8_DROME1.937e-1362.26NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305055 ID=CB305055; Name=CB305055; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACGCTCAAGCAAACAAGT
ATATAGTCAAACAAAATTACGAAAGAGTCATAATTTTTGAACCACAAAAA
CCATAGTAATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCG
ATCAATCACCGCCAGCCTTCTGGTAAACATAGGTGAGTCCACACTTGCCG
CAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGGGGCCGGCTCCACACTC
AGCATTCGGACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGA
CCTTGTAAAACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTG
ATCTTTTTCGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACC
ACGGAGACGGAGGACGAGGTGGAGTGTTGACTCCTTTTGGATGTTGTAGT
CGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGC
TGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATT
GTCGA
back to top