CB305057

Overview
NameCB305057
Unique NameCB305057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9028 contig Csv1_Contig9028:208..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_RABIT (Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.497e-29
Identity = 55/86 (63.95%), Postives = 72/86 (83.72%), Query Frame = -1
Query:  219 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 476
            ++ +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_MOUSE (Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.497e-29
Identity = 55/86 (63.95%), Postives = 72/86 (83.72%), Query Frame = -1
Query:  219 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 476
            ++ +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_MACFA (Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.497e-29
Identity = 55/86 (63.95%), Postives = 72/86 (83.72%), Query Frame = -1
Query:  219 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 476
            ++ +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_HUMAN (Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.497e-29
Identity = 55/86 (63.95%), Postives = 72/86 (83.72%), Query Frame = -1
Query:  219 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 476
            ++ +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_BOVIN (Dynein light chain 1, cytoplasmic OS=Bos taurus GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.497e-29
Identity = 55/86 (63.95%), Postives = 72/86 (83.72%), Query Frame = -1
Query:  219 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 476
            ++ +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_SCHMA (Dynein light chain OS=Schistosoma mansoni GN=DLC PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.430e-29
Identity = 54/88 (61.36%), Postives = 74/88 (84.09%), Query Frame = -1
Query:  219 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 482
            S ++ +IK+ADM E++Q++A+ IA  A +K+ +EKD+A  IKKDFD+K+ PTWHCIVG +FGSYVTHET++F+YFYLD +A LLFKSG
Sbjct:    2 SERKAVIKNADMSEEMQEDAIHIAAGAIDKHDLEKDIAANIKKDFDRKYHPTWHCIVGRHFGSYVTHETHNFIYFYLDDRAFLLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL2_SCHMA (Probable dynein light chain OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.290e-28
Identity = 54/86 (62.79%), Postives = 69/86 (80.23%), Query Frame = -1
Query:  219 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 476
            ++ +IK+ADM ED+Q+ AV  A AA +K  +EKDVA  IKK+FD+K+ P WHCIVG +FGSYVTHET HF+YFYL ++A LLFKSG
Sbjct:    4 RKAVIKNADMHEDMQETAVHTAAAALDKYEIEKDVAAYIKKEFDRKYNPNWHCIVGKHFGSYVTHETQHFIYFYLQERAFLLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_EMENI (Dynein light chain, cytoplasmic OS=Emericella nidulans GN=nudG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.186e-26
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = -1
Query:  222 IKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKS 464
            IKS DM ED+Q+EAV++AI A EK  +EKD+A+ IK++FD + G TWHC+VG NFGS+VTHET HF+YFYL   A+LLFK+
Sbjct:   13 IKSVDMSEDMQQEAVEVAIEAMEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGSFVTHETKHFIYFYLGHCAILLFKT 93          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_SCHPO (Dynein light chain 1, cytoplasmic OS=Schizosaccharomyces pombe GN=dlc2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.689e-26
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = -1
Query:  219 IIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 467
            +IK+ DM E +Q+EA+  A+ A EK ++EKD+A  IK++FDKK  PTWHCIVG NFGS+VTHE+ HF+YFYL   A LLFKSG
Sbjct:    3 VIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSFVTHESRHFIYFYLGTVAFLLFKSG 85          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL_DICDI (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.510e-24
Identity = 49/89 (55.06%), Postives = 72/89 (80.90%), Query Frame = -1
Query:  219 SGKRII-IKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 482
            S K II +K+ADM + +Q++A +  I AFE+ ++E+D+A  IKK+FDKK+ PTWHCIVG +FGS+VTHET +F+YF +++ +VLLFK+G
Sbjct:    3 SNKYIINVKNADMPDFMQQDATECTIKAFEETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFGSFVTHETKNFIYFNINKHSVLLFKAG 91          
The following BLAST results are available for this feature:
BLAST of CB305057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DYL1_RABIT1.497e-2963.95Dynein light chain 1, cytoplasmic OS=Oryctolagus c... [more]
DYL1_MOUSE1.497e-2963.95Dynein light chain 1, cytoplasmic OS=Mus musculus ... [more]
DYL1_MACFA1.497e-2963.95Dynein light chain 1, cytoplasmic OS=Macaca fascic... [more]
DYL1_HUMAN1.497e-2963.95Dynein light chain 1, cytoplasmic OS=Homo sapiens ... [more]
DYL1_BOVIN1.497e-2963.95Dynein light chain 1, cytoplasmic OS=Bos taurus GN... [more]
DYL1_SCHMA7.430e-2961.36Dynein light chain OS=Schistosoma mansoni GN=DLC P... [more]
DYL2_SCHMA6.290e-2862.79Probable dynein light chain OS=Schistosoma mansoni... [more]
DYL1_EMENI1.186e-2662.96Dynein light chain, cytoplasmic OS=Emericella nidu... [more]
DYL1_SCHPO7.689e-2661.45Dynein light chain 1, cytoplasmic OS=Schizosacchar... [more]
DYL_DICDI5.510e-2455.06Dynein light chain, cytoplasmic OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305057 ID=CB305057; Name=CB305057; organism=Citrus sinensis; type=EST; length=497bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTAAAAACTGCAGTGCACA
TCCATTTTGAAGTATCAAACCAGTTCCAAGCGAATTCAAATATACAACTT
AGGCTCAAGAATCTCCATGTAAAGATTTCAATTACTACATACAGACAATA
TTTATAGCATTTGGAACGTAAACTCATCATCCGAACCACAATCCACCATC
TTTCTCGACATTAGGCTAACCGGATTTGAATAACAAAACTGCTTTCTGAT
CCAAATAGAAATAAACAAAGTGGTTTGTTTCGTGAGTCACATATGAACCA
AAATTGCTACCGACAATACAGTGCCAAGTAGGTCCATGCTTCTTATCAAA
ATCCTTCTTTATCCTCTCAGCTACATCTTTCTCTACACTGTTCTTCTCAA
ATGCTGCAATAGCAATATCAACAGCCTCCTTTTGCAGGTCCTCTTTCATG
TCGGCGCTCTTAATAATGATTCGTTTTCCAGATTGGGACACTGCCAC
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