CB305058

Overview
NameCB305058
Unique NameCB305058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305058_ssr177 microsatellite CB305058_ssr177:177..194. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:424..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.063e-34
Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = -3
Query:  330 ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 620
            ARET+   NARIDWKETP+AHV KADLPG++         +GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVLT
Sbjct:   36 ARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLT 132          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.694e-34
Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = -3
Query:  270 PSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTXXXXXXXXXXXXXXAIEISG 629
            PSS + E S F + R+DWKETP+AHVFKAD+PGL+         +GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLT              AI+ISG
Sbjct:   33 PSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.518e-34
Identity = 70/119 (58.82%), Postives = 87/119 (73.11%), Query Frame = -3
Query:  270 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTXXXXXXXXXXXXXXAIEISG 626
            S  RE S F + R+DWKETP+AHVFKADLPG++         + R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLT               I+ISG
Sbjct:   40 SFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.518e-34
Identity = 72/121 (59.50%), Postives = 89/121 (73.55%), Query Frame = -3
Query:  273 NAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTXXXXXXXXXXXXXXAIEIS 635
            +A S  +E S F + RIDWKETP+AHVFKADLPGL+         + R+LQISGER+ E+E+KND+WHRVERSSGKF+RRFRLP+NAK++QVKA+MENGVLT              +IEIS
Sbjct:   22 SASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.337e-33
Identity = 72/119 (60.50%), Postives = 85/119 (71.43%), Query Frame = -3
Query:  270 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTXXXXXXXXXXXXXXAIEISG 626
            S + E S F + R+DWKETP+AHVFKAD+PGL+         + R+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLT              AIEISG
Sbjct:   36 SVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.746e-33
Identity = 70/115 (60.87%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  270 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTXXXXXXXXXXXXXXAIEISG 614
            ET+ FANAR+DWKETP+AHVFKADLPG++         +G +L +SGER+KE+E+KNDKWHRVERSSGKF+RRFRL ++AKVE+VKA +ENGVLT              AI+ISG
Sbjct:   37 ETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.635e-33
Identity = 70/119 (58.82%), Postives = 83/119 (69.75%), Query Frame = -3
Query:  270 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTXXXXXXXXXXXXXXAIEISG 626
            S + E S F N R+DWKET +AHV KAD+PGL+         + R+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLT               IEISG
Sbjct:   36 SVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.581e-32
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = -3
Query:  270 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTXXXXXXXXXXXXXXAIEISG 626
            S +RE S   NAR+DW+ETP+AHVFKADLPGL+         E  +L+ISGER  E+E+KND WHRVERSSG+F RRFRLP+N K++QVKA+MENGVLT              +I+ISG
Sbjct:   35 SLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.998e-29
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = -3
Query:  330 PSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 629
            PSS + ETS   NAR+DWKET +AHVFKADLPG++         +  +L+ISGER  E+EEK D WHRVERSSG+F R+F+LP+N K++QVKASMENGVLT
Sbjct:   35 PSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLT 135          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.813e-29
Identity = 63/100 (63.00%), Postives = 77/100 (77.00%), Query Frame = -3
Query:  330 PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 629
            PSS+  +S  ANAR+DWKET +AHVFKADLPG++         +  +L+ISGER  E+EEK D WHRVERSSG F R+FRLP+N K++QVKASMENGVLT
Sbjct:   36 PSSS--SSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLT 133          
The following BLAST results are available for this feature:
BLAST of CB305058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
HSP11_HELAN2.063e-3470.1017.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP11_SOYBN2.694e-3461.1617.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA3.518e-3458.8218.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_MEDSA3.518e-3459.5018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP14_SOYBN1.337e-3360.5017.5 kDa class I heat shock protein OS=Glycine max... [more]
HS16B_WHEAT1.746e-3360.8716.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HSP15_SOYBN6.635e-3358.8217.6 kDa class I heat shock protein OS=Glycine max... [more]
HS17B_ARATH9.581e-3257.1417.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS178_ARATH1.998e-2962.3817.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH5.813e-2963.0017.6 kDa class I heat shock protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305058 ID=CB305058; Name=CB305058; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTGCATTACAAAATATATT
TTATTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGA
CTGGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAA
ACAGGGGGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGC
TTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAA
CATTTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGT
TTCTTCTCCTCCTGTTTAGGAACAGCCACTGTGAGCACACCATTCTCCAT
GCTGGCCTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCC
TCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTC
TCTTCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTC
TTCAACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCT
TGAATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCG
AATTGGGATGTTTCCCTAGCCGAAGACGGCGCGTTGGTAAGGG
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