CB305058

Overview
NameCB305058
Unique NameCB305058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305058_ssr177 microsatellite CB305058_ssr177:177..194. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:424..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.651e-25
Identity = 64/122 (52.46%), Postives = 76/122 (62.30%), Query Frame = -3
Query:  270 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTXXXXXXXXXXXXXXAIEISG 626
            S A       N R+DWKETP AHVF ADLPG+R         +G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLT              AI ISG
Sbjct:   29 SLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.527e-24
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = -3
Query:  330 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 593
            AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLT 154          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.527e-24
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = -3
Query:  330 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 599
            ++AR+DWKETP+ HV   D+PGL+         E R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLT 162          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.130e-23
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = -3
Query:  330 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 617
            R+TS   + AR+DWKET + H    D+PGL+         E  +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLT 158          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.938e-21
Identity = 52/74 (70.27%), Postives = 57/74 (77.03%), Query Frame = -3
Query:  270 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTXXXXXXXXXXXXXXAIEISG 491
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLT              AIEISG
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.938e-21
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = -3
Query:  330 APSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 632
            APS+A   +   + A +DWKET  AHVF AD+PG+R         E ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT
Sbjct:   56 APSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLT 157          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.535e-18
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = -3
Query:  330 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 614
            + +  + AR+DW+ET  AH    D+PG+R         + R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLT
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLT 167          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.291e-17
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = -3
Query:  330 APSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 632
            A ++A E +  A AR DWKETP+AHV   D+PG+R         E  R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLT
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLT 167          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.908e-17
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = -3
Query:  330 ARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 620
            A +TS FAN  I+ +ET +A+VF+ADLP G++         EG +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LT
Sbjct:   32 ASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLT 129          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.658e-15
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = -3
Query:  330 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLT 599
            + A IDW E+  +H+FK ++PG           EG +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLT
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLT 114          
The following BLAST results are available for this feature:
BLAST of CB305058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
HS166_ORYSJ6.651e-2552.4616.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN2.527e-2457.9522.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA2.527e-2455.5622.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH8.130e-2352.5822.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HSP12_SOYBN9.938e-2170.27Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS189_ORYSJ9.938e-2149.0218.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ3.535e-1845.4523.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ2.291e-1744.9521.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS17B_ORYSJ3.908e-1747.9617.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS157_ARATH3.658e-1544.2115.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305058 ID=CB305058; Name=CB305058; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTGCATTACAAAATATATT
TTATTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGA
CTGGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAA
ACAGGGGGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGC
TTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAA
CATTTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGT
TTCTTCTCCTCCTGTTTAGGAACAGCCACTGTGAGCACACCATTCTCCAT
GCTGGCCTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCC
TCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTC
TCTTCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTC
TTCAACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCT
TGAATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCG
AATTGGGATGTTTCCCTAGCCGAAGACGGCGCGTTGGTAAGGG
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