CB305058

Overview
NameCB305058
Unique NameCB305058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305058_ssr177 microsatellite CB305058_ssr177:177..194. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:424..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.944e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = -3
Query:  330 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 584
            D KE P A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLT 139          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  330 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLT 599
            A   +DW+ETP AHVF+ DLPGL          +G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLT 133          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.433e-12
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = -3
Query:  330 SQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLT 608
            S  A A +DW ETP +HV + ++PGL          +G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLT
Sbjct:   25 SASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLT 123          
BLAST of CB305058 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = -3
Query:  333 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVL 635
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVL 132          
The following BLAST results are available for this feature:
BLAST of CB305058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
HSP21_MAIZE4.944e-1244.7117.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS178_ORYSJ6.457e-1237.6117.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP16_ORYSJ8.433e-1239.3916.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS176_ARATH5.466e-1135.5817.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305058 ID=CB305058; Name=CB305058; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTGCATTACAAAATATATT
TTATTGCATCACACTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGA
CTGGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAA
ACAGGGGGGAAGGGAAGCTCTTGCAAACACACACACACACACACAAGGGC
TTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACAATCTTGAAAA
CATTTACACTTATCACTTAGCCAGAGATCTCAATGGCCTTAACTTCAGGT
TTCTTCTCCTCCTGTTTAGGAACAGCCACTGTGAGCACACCATTCTCCAT
GCTGGCCTTAACCTGCTCCACCTTAGCATTGTCGGGCAACCTGAACCTCC
TCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTC
TCTTCCTGCTCCTTGCTCCTCTCCCCGCTTATCTGCAGAATCCTGCCCTC
TTCAACCTCAACTTTCACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCCT
TGAATACATGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCG
AATTGGGATGTTTCCCTAGCCGAAGACGGCGCGTTGGTAAGGG
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