CB305060 | Citrus Genome Database

Overview


Name	CB305060
Unique Name	CB305060
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	557

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9634	contig	Csv1_Contig9634:262..818.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_RAT (40S ribosomal protein S7 OS=Rattus norvegicus GN=Rps7 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.196e-40
Identity = 81/132 (61.36%), Postives = 107/132 (81.06%), Query Frame = -3

Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   59 AIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190

[Close]

BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_MOUSE (40S ribosomal protein S7 OS=Mus musculus GN=Rps7 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.196e-40
Identity = 81/132 (61.36%), Postives = 107/132 (81.06%), Query Frame = -3

Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   59 AIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190

[Close]

BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_HUMAN (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.196e-40
Identity = 81/132 (61.36%), Postives = 107/132 (81.06%), Query Frame = -3

Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   59 AIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190

[Close]

BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_FELCA (40S ribosomal protein S7 OS=Felis catus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.196e-40
Identity = 81/132 (61.36%), Postives = 107/132 (81.06%), Query Frame = -3

Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   59 AIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190

[Close]

BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_BOVIN (40S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.196e-40
Identity = 81/132 (61.36%), Postives = 107/132 (81.06%), Query Frame = -3

Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:   59 AIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190

[Close]

BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_TAKRU (40S ribosomal protein S7 OS=Takifugu rubripes GN=rps7 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.083e-39
Identity = 79/132 (59.85%), Postives = 107/132 (81.06%), Query Frame = -3

Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLT+VHDA+LED+V+P+EIVGKR+R ++D S++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDVVF++P
Sbjct:   59 AIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRSKNKQKRPRSRTLTSVHDAILEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190

[Close]

BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_DANRE (40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.639e-39
Identity = 78/132 (59.09%), Postives = 106/132 (80.30%), Query Frame = -3

Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLT VHDA+LED+V+P+EIVGKR+R +LD S++IK+ LD  ++NN E+K+E+F+GVY+KLTGKDV+F++P
Sbjct:   59 AIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVIFEFP 190

[Close]

BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_ANOGA (40S ribosomal protein S7 OS=Anopheles gambiae GN=RpS7 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.763e-38
Identity = 75/132 (56.82%), Postives = 107/132 (81.06%), Query Frame = -3

Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI++YVP   +KA++K+ +RLVRELEKKFSGK VV IA RRI+  P +G    +  +RPRSRTLTAV+DA+LED+V+PAE+VGKR+R +LDGS++IK+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   57 AIIIYVPVPKQKAFQKVQTRLVRELEKKFSGKHVVFIAERRILPKPMRGRRDPNKQKRPRSRTLTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFASVYKKLTGRDVTFEFP 188

[Close]

BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_CULQU (40S ribosomal protein S7 OS=Culex quinquefasciatus GN=RpS7 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.303e-38
Identity = 75/132 (56.82%), Postives = 107/132 (81.06%), Query Frame = -3

Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AIV+YVP   +KA++K+ +RLVRELEKKFSGK VV I  RRI+  P++G    +  +RPRSRTLTAV+DA+LED+V+PAE+VGKR+R +LDGS++IK+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   57 AIVIYVPVPKQKAFQKVQTRLVRELEKKFSGKHVVFIGERRILPKPQRGRRDPNKQKRPRSRTLTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188

[Close]

BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_CAEEL (40S ribosomal protein S7 OS=Caenorhabditis elegans GN=rps-7 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.949e-37
Identity = 73/133 (54.89%), Postives = 100/133 (75.19%), Query Frame = -3

Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ-----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI++YVP    KA+ KIH  LVRELEKKF G+D++++A RRI+  P++GS  +     RPRSRTLTAVHDA L+++VYPAE+VG+R+R +LDG K+ K+ LD   + N  +K+  F+ VYRKLTGKDV F++P
Sbjct:   58 AIIIYVPVPQLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFP 190

The following BLAST results are available for this feature:

BLAST of CB305060 vs. ExPASy Swiss-Prot

BLAST of CB305060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29


Match Name	E-value	Identity	Description
RS7_RAT	4.196e-40	61.36	40S ribosomal protein S7 OS=Rattus norvegicus GN=R...	[more]
RS7_MOUSE	4.196e-40	61.36	40S ribosomal protein S7 OS=Mus musculus GN=Rps7 P...	[more]
RS7_HUMAN	4.196e-40	61.36	40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P...	[more]
RS7_FELCA	4.196e-40	61.36	40S ribosomal protein S7 OS=Felis catus GN=RPS7 PE...	[more]
RS7_BOVIN	4.196e-40	61.36	40S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=...	[more]
RS7_TAKRU	2.083e-39	59.85	40S ribosomal protein S7 OS=Takifugu rubripes GN=r...	[more]
RS7_DANRE	4.639e-39	59.09	40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE...	[more]
RS7_ANOGA	1.763e-38	56.82	40S ribosomal protein S7 OS=Anopheles gambiae GN=R...	[more]
RS7_CULQU	2.303e-38	56.82	40S ribosomal protein S7 OS=Culex quinquefasciatus...	[more]
RS7_CAEEL	1.949e-37	54.89	40S ribosomal protein S7 OS=Caenorhabditis elegans...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0003_IVaR_E05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E05 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB305060 ID=CB305060; Name=CB305060; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTATGCAAAATGATGTCA
TACCAAATTTAAGAGTCAAAATTTTAAATAGTACCCTATCCAAATCAAAA
TTATAGTGCAACAAAATAAACAGTGACAAACACAAATGATCATCTGCAAC
AACTCTTCAGGCATCTGTAATTGGATAATCAAAAACCACGTCTTTGCCGG
TAAGCTTTCTGTAAACCCCTGAAAAAGACTCCAACTTGTACTCCGTGTTG
TTCCTCTCCTTTGGATCCAAGAAAATCTTGATTATTTTGGATCCATCGAG
ACGGTATCTGACACGTTTTCCAACAATCTCAGCTGGGTAAACTACATCTT
CAAGCATGGCATCATGAACAGCTGTGAGTGTGCGACTGCGAGGTCTCTGA
ACAGCAGAGCCTTTCTTTGGTGGCCTGACTATCCTTCGGGTGGCAATGAG
TACAACATCCTTGCCACTGAATTTCTTCTCCAGCTCTCTCACAAGGCGAG
AATGTATCTTCCGATAAGCCTTCCTCAATCTGTAAGGCACATAGACAACA
ATTGCCT