CB305060

Overview
NameCB305060
Unique NameCB305060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_SCHPO (40S ribosomal protein S7 OS=Schizosaccharomyces pombe GN=rps7 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.650e-36
Identity = 76/131 (58.02%), Postives = 98/131 (74.81%), Query Frame = -3
Query:  169 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV--QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPI 555
            AIVV+VP  L KA+ K  +RL RELEKKF+ + V+ IA RRI+  P + S V  +RPRSRTLTAVH+A+LED+V+P EI+GKR R   DG K IK+FLD ++ N  +YKL SFS VY KLTGK+V F++P+
Sbjct:   59 AIVVFVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVTQKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFPV 189          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_NEUCR (40S ribosomal protein S7 OS=Neurospora crassa GN=rps-7 PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.676e-36
Identity = 72/138 (52.17%), Postives = 104/138 (75.36%), Query Frame = -3
Query:  160 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ------RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 555
            AIV++VP    + + ++  RL RELEKKFS + V+++A+RRI+  PK+ S  +      RPRSRTLTAVHDA+L D+VYP EIVGKR+R + DGSK +K+ LD KER + +Y+L+++S VYR+LTGK+V+F++P+  A
Sbjct:   63 AIVIFVPVPSLQGFHRVQQRLTRELEKKFSDRHVLIVASRRILPRPKRSSRSRNTLKQKRPRSRTLTAVHDAILTDLVYPVEIVGKRLRVKEDGSKTLKVILDEKERGSVDYRLDTYSAVYRRLTGKNVLFEFPLVSA 200          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_DROME (40S ribosomal protein S7 OS=Drosophila melanogaster GN=RpS7 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.397e-35
Identity = 71/132 (53.79%), Postives = 104/132 (78.79%), Query Frame = -3
Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA----VQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            A+++YVP   +K ++KI   LVRELEKKFSGK VV+IA R+I+  P + +      +RPRSRTLTAV+DA+LED+V+PAEIVGKR+R +LDGS+++K+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   57 AVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_SPOFR (40S ribosomal protein S7 OS=Spodoptera frugiperda GN=RpS7 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.824e-35
Identity = 72/132 (54.55%), Postives = 102/132 (77.27%), Query Frame = -3
Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            +I++YVP    KA++KI  RLVRELEKKFSGK VV I  R+I+  P   + V    +RPRSRTLT+V+DA+LED+V+PAEIVGKR+R +LDGS++IK+ LD  ++   E+K+++F  VY+KLTG++V F++P
Sbjct:   55 SIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRIKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_MANSE (40S ribosomal protein S7 OS=Manduca sexta GN=RpS7 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.824e-35
Identity = 72/132 (54.55%), Postives = 102/132 (77.27%), Query Frame = -3
Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV----QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            +I++YVP    KA++KI  RLVRELEKKFSGK VV I  R+I+  P   + V    +RPRSRTLT+V+DA+LED+V+PAEIVGKR+R +LDGS++IK+ LD  ++   E+K+++F  VY+KLTG++V F++P
Sbjct:   55 SIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFIGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 186          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_DROYA (40S ribosomal protein S7 OS=Drosophila yakuba GN=RpS7 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.064e-35
Identity = 70/132 (53.03%), Postives = 103/132 (78.03%), Query Frame = -3
Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA----VQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            A+++YVP   +K ++KI   LVRELEKKFSGK VV+I  R+I+  P + +      +RPRSRTLTAV+DA+LED+V+PAEIVGKR+R +LDGS+++K+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:   57 AVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIGERKILPKPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQLVKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7B_YEAST (40S ribosomal protein S7-B OS=Saccharomyces cerevisiae GN=RPS7B PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.307e-33
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = -3
Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            A+V++VP     AY K+ ++L RELEKKF  + V+ +A RRI+  P + S    +RPRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLESF  VY KLTGK +VF+ P
Sbjct:   57 ALVLFVPVPALSAYHKVQTKLTRELEKKFPDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKVLEDMVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_DICDI (40S ribosomal protein S7 OS=Dictyostelium discoideum GN=rps7 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.913e-33
Identity = 70/130 (53.85%), Postives = 96/130 (73.85%), Query Frame = -3
Query:  175 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ---RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDY 555
            A+V++VP+R  K Y KI  +L  E+EKK  GK V+ IA RRI+R P   + ++   RP SRT+ AVHDA+L+D+V+P  IVG+R+RYRLDGSK+ KI+LD KE  +   K++SFS VY KLTGK+VVF++
Sbjct:   57 AVVIFVPFRQLKNYNKIQQKLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKIKMQKRPISRTIKAVHDAILDDLVFPNTIVGRRLRYRLDGSKLHKIYLDRKEMLSNISKVDSFSAVYHKLTGKEVVFEF 186          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7A_YEAST (40S ribosomal protein S7-A OS=Saccharomyces cerevisiae GN=RPS7A PE=1 SV=4)

HSP 1 Score: 138.272 bits (347), Expect = 2.466e-32
Identity = 68/130 (52.31%), Postives = 91/130 (70.00%), Query Frame = -3
Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            A+ ++VP      + K+ ++L RELEKKF  + V+ +A RRI+  P + S    +RPRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLESF  VY KLTGK +VF+ P
Sbjct:   57 ALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186          
The following BLAST results are available for this feature:
BLAST of CB305060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_SCHPO1.650e-3658.0240S ribosomal protein S7 OS=Schizosaccharomyces po... [more]
RS7_NEUCR3.676e-3652.1740S ribosomal protein S7 OS=Neurospora crassa GN=r... [more]
RS7_DROME1.397e-3553.7940S ribosomal protein S7 OS=Drosophila melanogaste... [more]
RS7_SPOFR1.824e-3554.5540S ribosomal protein S7 OS=Spodoptera frugiperda ... [more]
RS7_MANSE1.824e-3554.5540S ribosomal protein S7 OS=Manduca sexta GN=RpS7 ... [more]
RS7_DROYA4.064e-3553.0340S ribosomal protein S7 OS=Drosophila yakuba GN=R... [more]
RS7B_YEAST1.307e-3354.6240S ribosomal protein S7-B OS=Saccharomyces cerevi... [more]
RS7_DICDI2.913e-3353.8540S ribosomal protein S7 OS=Dictyostelium discoide... [more]
RS7A_YEAST2.466e-3252.3140S ribosomal protein S7-A OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305060 ID=CB305060; Name=CB305060; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTATGCAAAATGATGTCA
TACCAAATTTAAGAGTCAAAATTTTAAATAGTACCCTATCCAAATCAAAA
TTATAGTGCAACAAAATAAACAGTGACAAACACAAATGATCATCTGCAAC
AACTCTTCAGGCATCTGTAATTGGATAATCAAAAACCACGTCTTTGCCGG
TAAGCTTTCTGTAAACCCCTGAAAAAGACTCCAACTTGTACTCCGTGTTG
TTCCTCTCCTTTGGATCCAAGAAAATCTTGATTATTTTGGATCCATCGAG
ACGGTATCTGACACGTTTTCCAACAATCTCAGCTGGGTAAACTACATCTT
CAAGCATGGCATCATGAACAGCTGTGAGTGTGCGACTGCGAGGTCTCTGA
ACAGCAGAGCCTTTCTTTGGTGGCCTGACTATCCTTCGGGTGGCAATGAG
TACAACATCCTTGCCACTGAATTTCTTCTCCAGCTCTCTCACAAGGCGAG
AATGTATCTTCCGATAAGCCTTCCTCAATCTGTAAGGCACATAGACAACA
ATTGCCT
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