CB305061

Overview
NameCB305061
Unique NameCB305061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.227e-21
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYGMLG+NLP+  +VI LY   NI R+RLYDPN  AL+AL+G NIEVMLGLPN  ++ IAS    A  WVQ NV+
Sbjct:   35 IGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVK 112          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.227e-21
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYGMLG+NLP+  +VI LY   NI R+RLYDPN  AL+AL+G NIEVMLGLPN  ++ IAS    A  WVQ NV+
Sbjct:   35 IGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVK 112          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.227e-21
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYGMLG+NLP+  +VI LY   NI R+RLYDPN  AL+AL+G NIEVMLGLPN  ++ IAS    A  WVQ NV+
Sbjct:   36 IGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVK 113          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.227e-21
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYGMLG+NLP+  +VI LY   NI R+RLYDPN  AL+AL+G NIEVMLGLPN  ++ IAS    A  WVQ NV+
Sbjct:   35 IGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVK 112          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.569e-21
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            +GVCYGM+G+NLPS  +VI LY   NI R+RLYDPN  AL ALRG NIEV+LGLPN  ++ IAS    A  WVQ NV+
Sbjct:    1 LGVCYGMMGNNLPSHSEVIQLYKSRNIGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVK 78          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.661e-21
Identity = 44/79 (55.70%), Postives = 63/79 (79.75%), Query Frame = -1
Query:   29 QIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 265
            QIGVC+G +G+N+P+  +V+A++ Q +I RMR+Y PN +AL ALRG NIE +L +PN  L+ +A +QAEANTWV++NVQ
Sbjct:   26 QIGVCFGQMGNNIPNPSEVVAMFKQYSIPRMRMYGPNPDALNALRGSNIEFILDVPNGDLKRLADSQAEANTWVRDNVQ 104          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.227e-18
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYG   +NLPS  DVI LYN N IR++R+Y P++   +AL G NIE++LG+PN  L+ +A N + AN WVQ+N++
Sbjct:   12 IGVCYGKAANNLPSDQDVINLYNANGIRKLRIYYPDKNIFKALNGSNIEIILGVPNQDLEALA-NSSIANGWVQDNIR 88          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.833e-17
Identity = 40/78 (51.28%), Postives = 58/78 (74.36%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYG + +NLPS+ DVI LY  N IR+MR+Y P++   +AL+G NIE++L +PN  L+ +A N + AN WVQ+N++
Sbjct:   32 IGVCYGKIANNLPSEQDVINLYKANGIRKMRIYYPDKNIFKALKGSNIEIILDVPNQDLEALA-NSSIANGWVQDNIR 108          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.083e-17
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYG + +NLPS  DVI LYN NNI++MR+Y P      AL+G NIE++L +PN  L+ +A N ++   WVQ+N++
Sbjct:   26 IGVCYGKIANNLPSDQDVIKLYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDLEALA-NPSKRQGWVQDNIR 102          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.096e-17
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = -1
Query:   29 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 268
            + IGVCYG + +NLPS+ DVI LY  N IR+MR+Y P+    +AL G NIE++L +PN  L+ +A N + AN WVQ+N++
Sbjct:   34 SNIGVCYGEIANNLPSEQDVINLYKANGIRKMRIYYPDTNIFKALNGSNIEIILEVPNQDLEALA-NSSIANGWVQDNIR 112          
The following BLAST results are available for this feature:
BLAST of CB305061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
E13F_TOBAC1.227e-2162.82Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13E_TOBAC1.227e-2162.82Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_TOBAC1.227e-2162.82Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_NICPL1.227e-2162.82Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E131_SOLTU3.569e-2161.54Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13B_BRACM4.661e-2155.70Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13K_TOBAC8.227e-1852.56Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13L_TOBAC1.833e-1751.28Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13A_SOLLC4.083e-1750.00Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13D_TOBAC9.096e-1750.00Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305061 ID=CB305061; Name=CB305061; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACGTTGTTTTGGACCCAA
GTGTTCGCTTCGGCTTGATTGGAAGCGATTGGCTGGAGCTTATCGTTGGG
AAGGCCTAGCATGACTTCAATGTTGGGGCCACGAAGAGCTTCTAGAGCTT
CTCTGTTTGGATCATAGAGTCTCATTCTTCTGATGTTGTTTTGGTTGTAG
AGAGCTATGACATCTGGTTTTGATGGTAAGTTGTCACCAAGCATTCCATA
ACAAACACCTATCTGAGCAGTTGTAGTGTCTAGAGTAGCCACTAGCAGGC
CAAGAAGTAGCAAGACGACGGAAACCATTGGAGGGGTATTGAGGGAGGAT
AAGAATTTAGCCAGGGAGAAAAATGCAAATGGAAAAGTCCC
back to top