CB305061

Overview
NameCB305061
Unique NameCB305061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.647e-16
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = -1
Query:   32 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNV 262
            IGVCYG   +NLPS  DVI LYN N IR+MR+Y+P+     ALRG NIE++L +P   LQ + ++ + AN WVQ+N+
Sbjct:   32 IGVCYGKHANNLPSDQDVINLYNANGIRKMRIYNPDTNVFNALRGSNIEIILDVPLQDLQSL-TDPSRANGWVQDNI 107          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.457e-16
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = -1
Query:   29 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 268
            + IGVCYG + +NLPS+ DVI LY  N IR+MR+Y+ +    ++L G NIE++L +PN  L+ +A N + AN WVQ+N++
Sbjct:   34 SNIGVCYGKIANNLPSEQDVINLYKANGIRKMRIYNSDTNIFKSLNGSNIEIILDVPNQDLEALA-NSSIANGWVQDNIR 112          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.514e-16
Identity = 37/78 (47.44%), Postives = 56/78 (71.79%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYGM  +NLP+   V++++  N I+ MRLY PN+ AL+A+ G  I V++G PND L  +A++ A A +WV++N+Q
Sbjct:    7 IGVCYGMSANNLPAASTVVSMFKFNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSNIQ 84          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.006e-15
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = -1
Query:   29 DNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 235
            +NLPS  +VI LY   NI R+RLYDPN  AL ALRG NIEV+LGLPN  ++ IAS    A  WVQ NV+
Sbjct:    1 NNLPSHSEVIQLYKSRNIGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVK 69          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.313e-15
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYG++G+NLPS+ DV+ LY    I  MR+Y  + +AL ALR   I ++L + ND+L  IA++ + A +WVQNNV+
Sbjct:   29 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNVR 106          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.991e-15
Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = -1
Query:   29 GVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPN-DKLQPIASNQAEANTWVQNNVQ 259
            GVCYGM+GDNLPS+ DV+ LY   NI  MR+Y+P++EAL ALRG  I ++L +   D+++ +  + + A  WV++NVQ
Sbjct:    6 GVCYGMVGDNLPSRSDVVQLYKSRNIHAMRIYNPDQEALTALRGSGIFLILDVGGVDEVRRLGRDPSYAAGWVRSNVQ 83          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.519e-15
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYG+ GDNLP   DV+ LY  N I  +R+Y P+   L AL G +I +++ +PN  L  +AS+ + A  WVQ+NVQ
Sbjct:   30 IGVCYGVNGDNLPPASDVVQLYQSNGINLLRIYFPDANPLNALSGTSIGLIMDVPNTDLASLASDPSAAAAWVQSNVQ 107          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGV YGM+G +LPS   V+ALY  NNI  +R++ P+   LEALR   + V+LG  N  L P+AS+ + A +WV + VQ
Sbjct:    7 IGVNYGMMGSDLPSPDKVVALYKANNITDVRIFHPDTNVLEALRNSGLGVVLGTLNSDLAPLASDASYAASWVHSYVQ 84          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = -1
Query:   32 QIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNV 265
            ++GVCYG   D+LP+   V+ L  Q+NI+ +R+YD N + L+A    +IE+M+G+PN  L   + +Q+  +TW++N+V
Sbjct:   25 KVGVCYGRSADDLPTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSV 102          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.319e-12
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = -1
Query:   32 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNV 268
            ++IG+CYG   DNLPS   V  L    NI+ +R+YD N + L+A     IE+M+G+PN  L   A  Q+  +TW+ NN+
Sbjct:   25 SKIGICYGRNADNLPSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNI 103          
The following BLAST results are available for this feature:
BLAST of CB305061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
E13G_TOBAC2.647e-1651.95Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13C_TOBAC3.457e-1647.50Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
GUB2_HORVU4.514e-1647.44Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E133_SOLTU1.006e-1559.42Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E13B_HORVU1.313e-1548.72Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13E_HORVU4.991e-1548.72Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E13B_MAIZE6.519e-1547.44Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13F_HORVU1.229e-1347.44Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]
E1313_ARATH1.229e-1339.74Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E1312_ARATH2.319e-1241.77Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305061 ID=CB305061; Name=CB305061; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACGTTGTTTTGGACCCAA
GTGTTCGCTTCGGCTTGATTGGAAGCGATTGGCTGGAGCTTATCGTTGGG
AAGGCCTAGCATGACTTCAATGTTGGGGCCACGAAGAGCTTCTAGAGCTT
CTCTGTTTGGATCATAGAGTCTCATTCTTCTGATGTTGTTTTGGTTGTAG
AGAGCTATGACATCTGGTTTTGATGGTAAGTTGTCACCAAGCATTCCATA
ACAAACACCTATCTGAGCAGTTGTAGTGTCTAGAGTAGCCACTAGCAGGC
CAAGAAGTAGCAAGACGACGGAAACCATTGGAGGGGTATTGAGGGAGGAT
AAGAATTTAGCCAGGGAGAAAAATGCAAATGGAAAAGTCCC
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