CB305061

Overview
NameCB305061
Unique NameCB305061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.955e-12
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYG++ +NLP + +V+ LY    I  MR+Y    +A+ AL G  I +MLG  N+ +  +A + + A +WV  NV+
Sbjct:    1 IGVCYGIIANNLPPRREVVQLYRSKGITNMRIYSVQPQAIRALHGSGIRLMLGTTNNDVAVLAGSLSAATSWVHANVK 78          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.810e-12
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGL-PNDKLQPIASNQAEANTWVQNNVQ 262
            IGVCYG++ +NLP   +V+ LY  N +  MR+Y  + +AL ALRG  I ++L +  ND L  +A+N + A  WV++NV+
Sbjct:    2 IGVCYGVVANNLPPANEVVQLYRSNGLTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVR 80          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = -1
Query:   32 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNV 262
            IGVC G+LG+NLP+  DV+ LY    I  MR+Y+P  + L AL G  I V++ +    L  +AS+ + A  WV+ NV
Sbjct:   26 IGVCNGVLGNNLPAPSDVVTLYRSKRIDAMRIYEPESKVLTALSGTGIAVLMDV-GPALPSLASSPSAAAAWVKANV 101          
The following BLAST results are available for this feature:
BLAST of CB305061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
E13D_HORVU3.955e-1239.74Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13A_HORVU8.810e-1243.04Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E13C_HORVU9.741e-1142.86Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305061 ID=CB305061; Name=CB305061; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACGTTGTTTTGGACCCAA
GTGTTCGCTTCGGCTTGATTGGAAGCGATTGGCTGGAGCTTATCGTTGGG
AAGGCCTAGCATGACTTCAATGTTGGGGCCACGAAGAGCTTCTAGAGCTT
CTCTGTTTGGATCATAGAGTCTCATTCTTCTGATGTTGTTTTGGTTGTAG
AGAGCTATGACATCTGGTTTTGATGGTAAGTTGTCACCAAGCATTCCATA
ACAAACACCTATCTGAGCAGTTGTAGTGTCTAGAGTAGCCACTAGCAGGC
CAAGAAGTAGCAAGACGACGGAAACCATTGGAGGGGTATTGAGGGAGGAT
AAGAATTTAGCCAGGGAGAAAAATGCAAATGGAAAAGTCCC
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