CB305063

Overview
NameCB305063
Unique NameCB305063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.491e-29
Identity = 73/179 (40.78%), Postives = 93/179 (51.96%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF A  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+WFWMT        H V+                 GF      ING  ECG  +  +V DR+  Y  YC   GV PG  L+C
Sbjct:  129 AAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDC 307          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.478e-29
Identity = 76/179 (42.46%), Postives = 92/179 (51.40%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF A  +HETT              +C+ +E+  A  +CT S Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTALWFWMT        H+V+                 GF      ING  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:   81 AAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDC 259          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.889e-28
Identity = 71/179 (39.66%), Postives = 93/179 (51.96%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF    +HETT              +C+ +E+N    +C  SP++PCA G+ YYGRGPIQL+ N NY  AGRAIG D L++P+ VA D  +SFKTALWFWMT        H V+                 G+      +NG  ECG    D+V +R+  Y  YC  FG+  G  L+C
Sbjct:  145 AAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDC 323          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.467e-28
Identity = 70/178 (39.33%), Postives = 91/178 (51.12%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLNQ---------------GFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF    +HETT              +C++ E+N +     +PQ+PCA G+ YYGRGPIQ++ N NY + GRAIG D LN P+ VA D VISFK+ALWFWMT        H V+                 G+      ING  ECG     +V DR+  +  YC   GV  G+ L+C
Sbjct:  132 AAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 309          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 125.176 bits (313), Expect = 2.467e-28
Identity = 73/179 (40.78%), Postives = 92/179 (51.40%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF A  +HETT              +C+ +E+     +CT S Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTA+WFWMT        H+V+                 GF      +NG  ECG     +V DR+  Y  YC   GV  G+ L+C
Sbjct:  133 AAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDC 311          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.222e-28
Identity = 70/178 (39.33%), Postives = 91/178 (51.12%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLNQ---------------GFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF    +HETT              +C++ E+N +     +PQ+PCA G+ YYGRGPIQ++ N NY + GRAIG D LN P+ VA D VISFK+ALWFWMT        H V+                 G+      ING  ECG     +V DR+  +  YC   GV  G+ L+C
Sbjct:  131 AAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 308          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 72/179 (40.22%), Postives = 93/179 (51.96%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHC-TSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF A  +HETT              +CY  E+     +C +S Q+PCA GK Y+GRGPIQ++ N NY  AG AIG + LN+P+ VA D V+SFKTALWFWMT        H V+                 GF      ING  EC   +   + +R+  Y  YC+  GVDPG+ L+C
Sbjct:   61 AAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDC 239          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 70/179 (39.11%), Postives = 92/179 (51.40%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF    +HETT              +C+++E+N +  +C  SP+YPCA GK YYGRGP+QL+ N NY   G A+  + L +P+ VA DRV+SFKTALWFWMT        H VL                 G+      +NG  ECG     QV DR+  +  YC   GV  G+ L+C
Sbjct:   58 AAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDC 236          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 73/179 (40.78%), Postives = 92/179 (51.40%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF A  +HETT              +CY+ E+     +C  S Q+PCA G+ YYGRGPIQ++ N NY +AG+AIG D +N+P+ VA D VISFKTA WFWMT        H+V+                 GF      ING  ECG     QV DR+  Y  YC    V  G+ L+C
Sbjct:  121 AAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDC 299          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 70/179 (39.11%), Postives = 93/179 (51.96%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFFA  +HETT              +CY+ E+     +C  S Q+PCA G+ YYGRGPIQ++ N NY   GRAIG + LN+P+ VA + V+SFK+A+WFWMT        H V+                 G+      ING  ECG  +  +V DR+  Y  YC   GV PG  ++C
Sbjct:  141 AAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDC 319          
The following BLAST results are available for this feature:
BLAST of CB305063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIC_SOLLC6.491e-2940.78Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIC_SECCE8.478e-2942.46Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_ORYSJ1.889e-2839.66Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PHAVU2.467e-2839.33Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI1_HORVU2.467e-2840.7826 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI5_PHAVU3.222e-2839.33Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHID_SOLLC7.177e-2840.22Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIT_CARPA9.373e-2839.11Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_VITVI9.373e-2840.78Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI3_TOBAC9.373e-2839.11Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305063 ID=CB305063; Name=CB305063; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATCAGGTACAAGAAAAT
TATTCCGTCAGAGTTACCAAACAGAGAAAGTTGTTTGAAATAACTCTGGC
TTATTGTGATACAATATAATACATATACTGTAATATTTTTTGTACAAAAT
ATCTATTCAGCATTCAAGACGTGATCCAGGATCAACACCAAATCTTTTGC
AATAATCAGTGTAACGCCTAACACGATCCAGAACTTGGTCGCGGTTTCGG
CCACCGCATTCAGCAGGACCATTAATTTTCCGAATTGTTTCACTAAAACC
TTGGTTTAGTACTGAGTGCACATATGTCATCCAAAACCACAAAGCAGTCT
TGAAAGATATGACACGGTCCCTGGCTACTGTTTCCGGAGAGTTCAGACCG
TCGAAACCGATGGCCCTTCCCGCCTCTATGTAGTTTCCATTTCCGGTGAG
CTGAATCGGTCCCCGGCCGTAGTAGAATTTACCATTGGCACATGGGTATT
GTGGAGATGTACAATGAGGATCTGCTTTATTCTTCTCTTCTATGTAGCAA
AAATCTGTTGTTTCATGAGTGACATGGGCAAAAAATGCCGCAA
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