CB305063

Overview
NameCB305063
Unique NameCB305063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.401e-23
Identity = 69/177 (38.98%), Postives = 84/177 (47.46%), Query Frame = -3
Query:  160 AAFFAHVTHETTD------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFF   +HETT             +C+ EE NKA    TSP Y        YGRGPIQLTG  NY  AG A+G D + +P+ V+ D V+SFKTA+WFWMT        H V+                 G+      ING  ECG    D  +DR+  Y  YC   G   GS L+C
Sbjct:   89 AAFFGQTSHETTGGTRGSSDQFQWGYCFKEEINKA----TSPPY--------YGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDC 253          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.075e-23
Identity = 66/177 (37.29%), Postives = 82/177 (46.33%), Query Frame = -3
Query:  160 AAFFAHVTHETTD------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFF   +HETT             +C++ E N+              G  +YGRGPIQLTG  NY  AG+AIG D +N+P+ VA D  +SFKTA+WFWMT        H V+                 G+      ING  ECG     QV DR+  Y  YC    V PG  L+C
Sbjct:   75 AAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQM-------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDC 238          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.023e-22
Identity = 64/176 (36.36%), Postives = 83/176 (47.16%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-----------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSVLNQ------GFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFF   +HETT            +C++ + +++D               YYGRGPIQLT   NY +AG AIG + +N+P+ VA D  ISFKTA+WFWMT               +  S  +Q      G+      ING  ECG    D V DR+  Y  YC    V PG  L+C
Sbjct:   83 AAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDR--------------YYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDC 244          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.982e-21
Identity = 64/173 (36.99%), Postives = 82/173 (47.40%), Query Frame = -3
Query:  160 AAFFAHVTHETTD------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF A  +H T+       +CY E K      C  + ++PCA GK Y+ RGP+Q+  N NY  AG AIG D L +PE VA D  ++FKTALW WMT         H+V+                 G+  T   + G  +C G N     DRV  Y  YC   GV  G  L+C
Sbjct:  153 AAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.982e-21
Identity = 64/173 (36.99%), Postives = 82/173 (47.40%), Query Frame = -3
Query:  160 AAFFAHVTHETTD------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF A  +H T+       +CY E K      C  + ++PCA GK Y+ RGP+Q+  N NY  AG AIG D L +PE VA D  ++FKTALW WMT         H+V+                 G+  T   + G  +C G N     DRV  Y  YC   GV  G  L+C
Sbjct:  153 AAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRYCDVLGVGYGPNLDC 323          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 63/176 (35.80%), Postives = 80/176 (45.45%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-----------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSVLNQ------GFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFF   +HETT            +C++ + +++D               YYGRGPIQLT   NY +AG AI  D +N+P+ VA D  ISFKTA+WFWMT               +  S  +Q      G       ING  ECG      V DR+  Y  YC    V PG  L+C
Sbjct:   83 AAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDR--------------YYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDC 244          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.217e-20
Identity = 63/177 (35.59%), Postives = 79/177 (44.63%), Query Frame = -3
Query:  160 AAFFAHVTHETTD------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFF   +HETT             +C++ E N+              G  YYGRGPIQLTG  NY  AG+AI  D +N+P+ VA D  +SFKTA+WFWMT        H V+                 G+      ING  ECG     +V DR+  Y        V PG  L+C
Sbjct:   82 AAFFGQTSHETTGGTLSPDGPYAGGYCFLREGNQM-------------GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDC 245          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.395e-20
Identity = 63/179 (35.20%), Postives = 80/179 (44.69%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLNQ---------------GFSETIRKINGPAECG-GRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFF   +HETT              +C + E   +DP              YYGRGPIQLT   NY  AG A+G D +N+P+ V+ D V++F+TA+WFWMT        H V+                 G+      ING  ECG G + D   DRV  Y  YC  F V  G  + C
Sbjct:   82 AAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDPP-------------YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIAC 247          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: IAMY_COILA (Alpha-amylase inhibitor/endochitinase (Fragments) OS=Coix lachryma-jobi PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.227e-19
Identity = 60/139 (43.17%), Postives = 73/139 (52.52%), Query Frame = -3
Query:  166 FAHVTHETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRL 582
            FAHVTHET +  Y       DP  T  Q PCA GK YYGRGPIQ++ N NY  AGRAIG DGL +P+ VA+D +  +KTAL F                   +NG     G +     + V  Y  YC++ GVDPG  L
Sbjct:   24 FAHVTHETGNNAY------CDPSKT--QKPCAAGKKYYGRGPIQISXNYNYGPAGRAIGMDGLGNPDRVAQDALDDYKTALXF------------------LVNGEEAVPGLS---AANAVSYYRQYCQQLGVDPGPNL 133          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.663e-19
Identity = 66/180 (36.67%), Postives = 79/180 (43.89%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWM------TYVHSVLN---------------QGFSETIRKINGPAECG-GRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAF    +HETT              +CY++E N   P+C  S  Y C  GK Y GRGPIQL+ N NY   G  +    L  PE V  D VISFKTA+WFWM         H+V+                 G+      ING  ECG G       DR+  Y  YC   G   GS L+C
Sbjct:  145 AAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDC 323          
The following BLAST results are available for this feature:
BLAST of CB305063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI8_ORYSJ1.401e-2338.98Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_SOLLC4.075e-2337.29Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIQ_TOBAC2.023e-2236.36Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI7_ORYSJ4.982e-2136.99Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.982e-2136.99Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIP_TOBAC1.893e-2035.80Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIT_PETHY4.217e-2035.59Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI11_ORYSJ9.395e-2035.20Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
IAMY_COILA1.227e-1943.17Alpha-amylase inhibitor/endochitinase (Fragments) ... [more]
CHI6_POPTR4.663e-1936.67Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305063 ID=CB305063; Name=CB305063; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATCAGGTACAAGAAAAT
TATTCCGTCAGAGTTACCAAACAGAGAAAGTTGTTTGAAATAACTCTGGC
TTATTGTGATACAATATAATACATATACTGTAATATTTTTTGTACAAAAT
ATCTATTCAGCATTCAAGACGTGATCCAGGATCAACACCAAATCTTTTGC
AATAATCAGTGTAACGCCTAACACGATCCAGAACTTGGTCGCGGTTTCGG
CCACCGCATTCAGCAGGACCATTAATTTTCCGAATTGTTTCACTAAAACC
TTGGTTTAGTACTGAGTGCACATATGTCATCCAAAACCACAAAGCAGTCT
TGAAAGATATGACACGGTCCCTGGCTACTGTTTCCGGAGAGTTCAGACCG
TCGAAACCGATGGCCCTTCCCGCCTCTATGTAGTTTCCATTTCCGGTGAG
CTGAATCGGTCCCCGGCCGTAGTAGAATTTACCATTGGCACATGGGTATT
GTGGAGATGTACAATGAGGATCTGCTTTATTCTTCTCTTCTATGTAGCAA
AAATCTGTTGTTTCATGAGTGACATGGGCAAAAAATGCCGCAA
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