CB305064

Overview
NameCB305064
Unique NameCB305064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6139 contig Csv1_Contig6139:725..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.416e-40
Identity = 80/157 (50.96%), Postives = 112/157 (71.34%), Query Frame = -3
Query:  162 KEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ*IFHYEKNN 629
            KE  G +++   +KINYYP CP+P+LALGV AHTD+SALT ++ N VPGLQ+F + +W+ AK +P+++V+HIGD +EILSNGKYK++LHR  V+K+K R+SW VF EPP D +V  PLP++V  E+P K+  + F  +   KL    Q     EKN+
Sbjct:  200 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSEKND 356          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.029e-40
Identity = 74/148 (50.00%), Postives = 108/148 (72.97%), Query Frame = -3
Query:  189 KEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 629
            KE  G +++   +KINYYP CP+P+LALGV AHTD+SALT ++ N VPGLQ+F + +W+ AK +PN++V+HIGD +EILSNGKYK++LHR  V+K+K R+SW VF EPP + ++  PLP+ V ++ P  +  + F ++   KL +  Q
Sbjct:  204 KEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPNSIVMHIGDTLEILSNGKYKSILHRGMVNKEKVRISWAVFCEPPKEKIILKPLPETVSEDEPAMFPPRTFAEHIQHKLFRKSQ 351          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.274e-37
Identity = 72/145 (49.66%), Postives = 103/145 (71.03%), Query Frame = -3
Query:  189 AGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTV-VGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 620
            A  DD+   LKINYYP CP+P+LA+GV AHTD+SAL+ ++ N VPGLQV    RW+ A++ P  +++H+GD +EILSNG+Y +VLHR  V+++  R+SW VF EPP D+V + PLP+LV + +P ++  + FK +   KL K  Q
Sbjct:  225 AADDDLLLQLKINYYPRCPQPELAVGVEAHTDVSALSFILHNGVPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVLLHPLPELVTEGHPARFTPRTFKQHLDRKLFKKKQ 369          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.043e-36
Identity = 65/114 (57.02%), Postives = 90/114 (78.95%), Query Frame = -3
Query:  288 KEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVV 629
            KE  G +++    KINYYP CP+P+LALGV AHTD+SALT ++ N VPGLQ+F + +W+ AK +PN++++HIGD IEILSNGKYK++LHR  V+K+K R+SW VF EPP + ++
Sbjct:  206 KEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKII 319          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.001e-27
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  189 MLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDD-RWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 596
            ++++N+YP CP PD A+G+ AHTD + +T+L  N   GLQVF+DD  W+ A  +P +LV+++GD + IL+NG + +VLHR  V+  ++R S      PP+D ++ PLP+LVD    P Y +  +K Y   K     Q
Sbjct:  204 VIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVNHVRSRFSMAYLWGPPSDIMISPLPKLVDPLQSPLYPSLTWKQYLATKATHFNQ 340          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.986e-26
Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDE----NPPKYKAKKFKDY 590
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD RWID   + +++V+++GDQ+E+++NGKYK+V+HR    KD TRMS   F  P  D ++ P P LVD E    N   Y    F DY
Sbjct:  158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGRWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGTRMSLASFYNPGNDALIYPAPALVDKEAEEHNKQVYPKFMFDDY 286          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.387e-26
Identity = 58/128 (45.31%), Postives = 83/128 (64.84%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVD---DENPPKYKAKKFKDY 590
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KDD+WID   + +++VI++GDQ+E+++NGKYK+V HR     D TRMS   F  P +D V+ P P LV+   +EN   Y    F DY
Sbjct:  158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVPHRVIAQTDGTRMSLASFYNPASDAVIYPAPALVERDAEENKQIYPKFVFDDY 285          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.423e-26
Identity = 59/149 (39.60%), Postives = 88/149 (59.06%), Query Frame = -3
Query:  150 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDR-WIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ*IFHYEKNNTSIR 593
            L++N+YP CP PD A+G+ AHTD + LT+L  N   GLQVF+DD  W+     P +LV+++GD   ILSNG +K+VLHR  V++ + R+S      P +D  + P+P+LV     P Y++  +K+Y   K         H+ K  + IR
Sbjct:  212 LQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLRTKAT-------HFNKALSMIR 353          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.777e-26
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = -3
Query:  204 KINYYPPCPRPDLALGVVAHTDLSALTVLVP-NEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVD-DENPPKYKAKKFKDYSYCKL 590
            K++ YPPCPRP+L  G+ AHTD   + +L   N+V GLQ+ KD  WID   + +++VI+IGDQ+E+++NGKYK+V+HR     D  RMS   F  P +D V+ P P LVD +E+  K    KF    Y KL
Sbjct:  158 KVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVIAQPDGNRMSIASFYNPGSDAVMYPAPALVDKEEDQQKQVYPKFVFEDYMKL 288          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.777e-26
Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVD---DENPPKYKAKKFKDY 590
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD +WID   + +++V+++GDQ+E+++NGKYK+V+HR    KD  RMS   F  P +D V+ P P LV+   +EN   Y    F DY
Sbjct:  158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285          
The following BLAST results are available for this feature:
BLAST of CB305064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
LDOX_ARATH1.416e-4050.96Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
LDOX_MALDO7.029e-4050.00Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
LDOX_MAIZE7.274e-3749.66Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
LDOX_VITVI8.043e-3657.02Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
G3OX2_ARATH4.001e-2740.88Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ACCO2_SOLLC1.986e-2644.961-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
ACCO4_PETHY3.387e-2645.311-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
G3OX1_ARATH4.423e-2639.60Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCO_ACTDE5.777e-2645.801-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO1_PETHY5.777e-2643.751-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305064 ID=CB305064; Name=CB305064; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAATAAAGGATTATT
TATTATTGCTAATACCCGCGATTACATTTCAGAAACAAGATCGCAACAAC
AAACAAGAATCGATAAACGTACAGTGACGAGATAAAACATGAGCGGCCAG
CGGATACTGGTGTTATTTTTCTCATAATGAAAAATCTACTGAGGAAGTTT
GTTAAGTTTACAGTAACTGTAATCCTTGAACTTCTTGGCCTTGTACTTTG
GAGGATTTTCATCGTCAACCAGCTGAGGAAGGGGACCCACCACCGTATCC
GCAGGTGGCTCCAAGAAAACTGGCCACGACATTCTCGTCTTGTCCTTGCT
AACAGTGGTTCTATGCAGCACAGCTTTGTACTTGCCATTGCTCAGAATCT
CGATCTGGTCCCCGATGTGGATGACGAGAGCGTTGGGGATGTACTTGGCA
TCGATCCAACGGTCGTCCTTAAAGACTTGCAGACCAGGAACTTCATTGGG
AACAAGAACGGTGAGGGCAGAAAGATCAGTGTGGGCCACCACTCCAAGAG
CAAGATCAGGACGTGGGCATGGCGGATAATAATTAATCTTGAGCATGTAC
TCAATGTCGTCTCCTCCCGCTGCTTCTTTCA
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