CB305064

Overview
NameCB305064
Unique NameCB305064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6139 contig Csv1_Contig6139:725..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.545e-26
Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = -3
Query:  198 KEAAGGDD--IEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKK-------FKDYSYCKLNK 629
            K   GG D    +  K++ YPPCP+P+L  G+ AHTD   + +L  ++ V GLQ+ KD  WID   + +++V++IGDQ+E+++NGKYK+VLHR     D  RMS   F  P +D V+ P P LV+ E   K + KK       F+DY    + K
Sbjct:  147 KVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDVPPVRHSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEKEAEEKEEKKKEIYPKFVFQDYMNLYIRK 300          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.854e-26
Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = -3
Query:  204 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKL 590
            K+  YPPCP+ DL  G+ AHTD   + +L  ++ V GLQ+ KDD+WID   + +++VI++GDQ+E+++NGKYK+VLHR     D TRMS   F  P  D V+ P P LV+ E   K    KF    Y KL
Sbjct:  158 KVANYPPCPKADLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVVAQTDGTRMSIASFYNPGNDAVIYPAPALVEKEVEEKEVYPKFVFDDYMKL 287          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.195e-25
Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = -3
Query:  204 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKA--KKFKDYSYCKL 590
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD +WID   + +++V+++GDQ+E+++NGKYK+VLHR     D TRMS   F  P +D V+ P P LV+ E   + K    KF    Y KL
Sbjct:  158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFYNPGSDAVIYPAPTLVEKEADQECKQVYPKFVFDDYMKL 289          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.195e-25
Identity = 52/126 (41.27%), Postives = 84/126 (66.67%), Query Frame = -3
Query:  216 NYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFL-EPP--ADTVVGPLPQLVDDENPPKYKAKKFKDYS 584
            NYYPPCP+P+L +G + HTD+  +T+L+ +++ GLQV   + W+D    P +LV++IGD +++LSN KY +V HR   +   +RMS   F  E P  +  + GP+ +L+ ++NPPKY+A   KD++
Sbjct:  219 NYYPPCPQPELTMGTIQHTDIGFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHT 344          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.867e-25
Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 590
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD++WID   + +++V+++GDQ+E+++NGKYK+V+HR     D TRMS   F  P  D V+ P P L+ +E+   Y    F DY
Sbjct:  158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGTRMSLASFYNPGNDAVIYPAPSLI-EESKQVYPKFVFDDY 281          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.745e-25
Identity = 53/135 (39.26%), Postives = 87/135 (64.44%), Query Frame = -3
Query:  216 DDIEYM--LKINYYPPCPRPDLALGVVAHTDLSALTVLVP-NEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYS 611
            DD++ +  +++NYYPPCP+PD  +G+  H+D   LTVL+  N+V GLQ+ KD +W+  K +PNA +++IGD +EI++NG Y+++ HR  V+ +K R+S   F        VGP   LV+ +   ++K    K+Y+
Sbjct:  205 DDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYN 339          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.745e-25
Identity = 56/128 (43.75%), Postives = 81/128 (63.28%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPK---YKAKKFKDY 590
            K++ YPPCPRP+L  G+ AHTD   L +L  ++ V GLQ+ KD  W+D   + +++VI++GDQ+E+++NGKYK+V+HR     D  RMS   F  P +D V+ P P LV+ E   K   Y    F+DY
Sbjct:  159 KVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITNGKYKSVMHRVVAQTDGNRMSLASFYNPGSDAVIFPAPALVEKEAEEKKEVYPKFVFEDY 286          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.891e-25
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDD--ENPPKYKAKKFKDY 590
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD  W+D   + +++VI++GDQIE+++NGKYK+++HR     D TRMS   F  P  D  + P P L+++  E  P Y    F DY
Sbjct:  158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWMDVPPVHHSIVINLGDQIEVITNGKYKSIMHRVIAQSDGTRMSIASFYNPGDDAFISPAPALLEEKSEVSPTYPKFLFDDY 284          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25
Identity = 56/132 (42.42%), Postives = 84/132 (63.64%), Query Frame = -3
Query:  204 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKA--KKFKDYSYCKL 590
            K++ YPPCP+P+L  G+ AHTD   + +L  ++ V GLQ+ KD+ WID   + +++V++IGDQ+E+++NGKYK+V+HR     +  RMS   F  P +D V+ P P+LV+ E   K K    KF    Y KL
Sbjct:  156 KVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRVVAQTNGNRMSIASFYNPGSDAVIFPAPELVEKEAAEKKKETYPKFVFEDYMKL 287          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25
Identity = 55/128 (42.97%), Postives = 83/128 (64.84%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVD---DENPPKYKAKKFKDY 590
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD++WID   + +++V+++GDQ+E+++NGKYK+VLHR     D TRMS   F  P +D V+ P   LV+   +E+   Y    F DY
Sbjct:  158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFYNPGSDAVIYPAKTLVEKEAEESTQVYPKFVFDDY 285          
The following BLAST results are available for this feature:
BLAST of CB305064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCO1_DORSP7.545e-2640.261-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCO_DIOKA9.854e-2645.381-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
ACCO3_PETHY2.195e-2543.941-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCH3_SOLLC2.195e-2541.271-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO4_SOLLC2.867e-2543.201-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
SRG1_ARATH3.745e-2539.26Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
ACCO_PERAE3.745e-2543.751-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO2_MALDO4.891e-2542.521-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCO_DENCR6.387e-2542.421-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO1_SOLLC6.387e-2542.971-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305064 ID=CB305064; Name=CB305064; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAATAAAGGATTATT
TATTATTGCTAATACCCGCGATTACATTTCAGAAACAAGATCGCAACAAC
AAACAAGAATCGATAAACGTACAGTGACGAGATAAAACATGAGCGGCCAG
CGGATACTGGTGTTATTTTTCTCATAATGAAAAATCTACTGAGGAAGTTT
GTTAAGTTTACAGTAACTGTAATCCTTGAACTTCTTGGCCTTGTACTTTG
GAGGATTTTCATCGTCAACCAGCTGAGGAAGGGGACCCACCACCGTATCC
GCAGGTGGCTCCAAGAAAACTGGCCACGACATTCTCGTCTTGTCCTTGCT
AACAGTGGTTCTATGCAGCACAGCTTTGTACTTGCCATTGCTCAGAATCT
CGATCTGGTCCCCGATGTGGATGACGAGAGCGTTGGGGATGTACTTGGCA
TCGATCCAACGGTCGTCCTTAAAGACTTGCAGACCAGGAACTTCATTGGG
AACAAGAACGGTGAGGGCAGAAAGATCAGTGTGGGCCACCACTCCAAGAG
CAAGATCAGGACGTGGGCATGGCGGATAATAATTAATCTTGAGCATGTAC
TCAATGTCGTCTCCTCCCGCTGCTTCTTTCA
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