CB305064

Overview
NameCB305064
Unique NameCB305064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6139 contig Csv1_Contig6139:725..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.342e-25
Identity = 53/126 (42.06%), Postives = 81/126 (64.29%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLV-DDENPPKYKAKKFKDY 590
            K++ YPPCPRPDL  G+ AHTD   + +L  ++ V GLQ+ KD  W+D   + +++V+++GDQ+E+++NG+YK+V+HR     D  RMS   F  P +D V+ P P LV ++E    Y    F+DY
Sbjct:  164 KVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVMHRVVAQTDGNRMSIASFYNPGSDAVISPAPALVKEEEAVVAYPKFVFEDY 289          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.090e-24
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVD---DENPPKYKAKKFKDY 590
            K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD +WID   +  ++V+++GDQ+E+++NGKYK+V+HR     D TRMS   F  P +D V+ P P LV+   +E+   Y    F DY
Sbjct:  158 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGQWIDVPPMRLSIVVNLGDQLEVITNGKYKSVMHRVITQTDGTRMSLASFYNPGSDAVIFPAPTLVEKEAEESKAIYPKFVFDDY 285          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.090e-24
Identity = 57/143 (39.86%), Postives = 87/143 (60.84%), Query Frame = -3
Query:  204 GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLV--DDENPPKYKAKKFKDYS--YCKL 617
            G +   +  K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD  W+D   + +++V+++GDQ+E+++NGKYK+V+HR     D  RMS   F  P +D V+ P P LV  ++E    Y    F+DY   Y KL
Sbjct:  155 GANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGHWVDVPPMKHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGNRMSIASFYNPGSDAVIYPAPTLVEKEEEKCRAYPKFVFEDYMNLYLKL 297          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.090e-24
Identity = 53/126 (42.06%), Postives = 81/126 (64.29%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLV-DDENPPKYKAKKFKDY 590
            K++ YPPCPRPDL  G+ AHTD   + +L  ++ V GLQ+ KD  W+D   + +++V+++GDQ+E+++NG+YK+V+HR     D  RMS   F  P +D V+ P P LV ++E    Y    F+DY
Sbjct:  164 KVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVIHRVVAQTDGNRMSIASFYNPGSDAVISPAPALVKEEEAVVAYPKFVFEDY 289          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.090e-24
Identity = 52/127 (40.94%), Postives = 82/127 (64.57%), Query Frame = -3
Query:  216 NYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSK-DKTRMSWPVFLEP---PADTVVGPLPQLVDDENPPKYKAKKFKDYS 584
            +YYPPCP PDL LG   H+D S LTVL+P+++ GLQV ++  W D  ++  AL+I+IGD +++++N K+ ++ HR   ++  + R+S   F      P   + GP+ +LV +ENPPKY+    KDY+
Sbjct:  224 HYYPPCPEPDLTLGTSQHSDNSFLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEENPPKYRETTIKDYA 350          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.423e-24
Identity = 55/130 (42.31%), Postives = 80/130 (61.54%), Query Frame = -3
Query:  204 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKL 590
            K++ YPPCP+P+L  G+ AHTD   L +L  ++ V GL V KD +W+D   + +++VI++GDQ+E+++NGKYK+V+HR    +D  RMS   F  P  D V+ P P LV+ E        KF    Y KL
Sbjct:  159 KVSNYPPCPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDGNRMSIASFYNPGNDAVIYPAPALVEGEQEKTKLYPKFVFDDYMKL 288          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.423e-24
Identity = 53/127 (41.73%), Postives = 81/127 (63.78%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVD--DENPPKYKAKKFKDY 590
            K++ YPPCP+PDL  G+ AH+D   + +L  ++ V GLQ+ KD  W+D   + +++VI++GDQIE+++NGKYK+V+HR     D TRMS   F  P  D+ + P P +++   E+ P Y    F DY
Sbjct:  158 KVSNYPPCPKPDLIKGLRAHSDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMHHSIVINLGDQIEVITNGKYKSVMHRVIAQSDGTRMSIASFYNPGNDSFISPAPAVLEKKTEDAPTYPKFVFDDY 284          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.423e-24
Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = -3
Query:  216 NYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSK-DKTRMSWPVFLE---PPADTVVGPLPQLVDDENPPKYKAKKFKDYS 584
            +Y+PPCP PDL  G   H+D S LTVL+P+ + GLQV ++  W D  ++P AL+I+IGD +++++N K+ ++ HR   ++  + R+S   F      P   V GP+ +LV +ENPPKY+    +DY+
Sbjct:  224 HYFPPCPEPDLTFGTSKHSDGSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTHVKPNPRVYGPIKELVSEENPPKYRETTIRDYA 350          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.170e-24
Identity = 56/128 (43.75%), Postives = 81/128 (63.28%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPK---YKAKKFKDY 590
            K++ YPPCP P+L  G+ AHTD   L +L  ++ V GLQ+ KD +WID   + +++VI++GDQ+E+++NGKY++V HR     D TRMS   F  P +D V+ P P LV+ E   K   Y    F+DY
Sbjct:  158 KVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPTLVEKEAEEKNQVYPKFVFEDY 285          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.140e-24
Identity = 51/119 (42.86%), Postives = 75/119 (63.03%), Query Frame = -3
Query:  240 MLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYK 596
            ++ INYYPP P P   LG+  H D   +TVL+P  VPGL++     WI  + +PN+LVI+ G Q+E+++NG  KAV HR   +  + R+S   F+ P  D VVGP  + V ++NPP+Y+
Sbjct:  187 VVDINYYPPSPNPSRTLGLPPHCDRDLMTVLLPGAVPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADDCVVGPAEEFVSEDNPPRYR 305          
The following BLAST results are available for this feature:
BLAST of CB305064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCO1_ORYSI8.342e-2542.061-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO_TOBAC1.090e-2442.971-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
ACCO_DIACA1.090e-2439.86Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
ACCO1_ORYSJ1.090e-2442.061-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCH3_ARATH1.090e-2440.941-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO3_CUCME1.423e-2442.311-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO1_MALDO1.423e-2441.731-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCH2_ARATH1.423e-2440.161-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO_PRUMU3.170e-2443.751-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
IDS2_HORVU4.140e-2442.86Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305064 ID=CB305064; Name=CB305064; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAATAAAGGATTATT
TATTATTGCTAATACCCGCGATTACATTTCAGAAACAAGATCGCAACAAC
AAACAAGAATCGATAAACGTACAGTGACGAGATAAAACATGAGCGGCCAG
CGGATACTGGTGTTATTTTTCTCATAATGAAAAATCTACTGAGGAAGTTT
GTTAAGTTTACAGTAACTGTAATCCTTGAACTTCTTGGCCTTGTACTTTG
GAGGATTTTCATCGTCAACCAGCTGAGGAAGGGGACCCACCACCGTATCC
GCAGGTGGCTCCAAGAAAACTGGCCACGACATTCTCGTCTTGTCCTTGCT
AACAGTGGTTCTATGCAGCACAGCTTTGTACTTGCCATTGCTCAGAATCT
CGATCTGGTCCCCGATGTGGATGACGAGAGCGTTGGGGATGTACTTGGCA
TCGATCCAACGGTCGTCCTTAAAGACTTGCAGACCAGGAACTTCATTGGG
AACAAGAACGGTGAGGGCAGAAAGATCAGTGTGGGCCACCACTCCAAGAG
CAAGATCAGGACGTGGGCATGGCGGATAATAATTAATCTTGAGCATGTAC
TCAATGTCGTCTCCTCCCGCTGCTTCTTTCA
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