CB305064

Overview
NameCB305064
Unique NameCB305064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6139 contig Csv1_Contig6139:725..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  243 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 608
            D   +++ NYYPPCP P+  LG   H D +ALT+L+ ++V GL+V  D  W     +P A+VI+IGD    LSNG+YK+ LHR  V++ + R S   FL P  D VV P P     ++ P +
Sbjct:  224 DSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDF 345          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  243 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 608
            D   +++ NYYPPCP P+  LG   H D +ALT+L+ ++V GL+V  D  W     +P A+VI+IGD    LSNG+YK+ LHR  V++ + R S   FL P  D VV P P     ++ P +
Sbjct:  224 DSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDF 345          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 49/129 (37.98%), Postives = 80/129 (62.02%), Query Frame = -3
Query:  219 NYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFL-------EPPADTVVGPLPQLVDDENPPKYKAKKFKDY 584
            +YYP CP+P+L  G   H+D   LT+L+ +++ GLQ+  +++WID  +IP ALVI+I D +++++N K+K+V HR   +K   R+S  V         E  +  + GP+ +L+ +ENPP YK    KD+
Sbjct:  251 HYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDF 379          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 47/126 (37.30%), Postives = 77/126 (61.11%), Query Frame = -3
Query:  216 NYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEP---PADTVVGPLPQLVDDENPPKYKAKKFKDYS 584
            +YYPPCP+PDL LG+  H+D S LT+L+ + + GLQV  D  W+D   +P ALV+++GD +++++N K+ +V HR   +    R+S   F          V GP+ +++ +ENPP Y+     +Y+
Sbjct:  221 HYYPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYA 346          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = -3
Query:  213 DDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSY 611
            ++ + ++++N+YPPC  PDL LG   H D S+LT+L  + V GLQVF D++W   +  P A V++IGD    LSNG +K+ LHR  V+++  R S   FL P  D VV P   +++     K K +K+ D+++
Sbjct:  219 EENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILE-----KMKTRKYPDFTW 346          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.473e-21
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = -3
Query:  243 DDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 611
            ++ + ++++NYYPPC +PDL LG   H D ++LT+L  + V GLQVF +++W   +  P A V++IGD    LSN +YK+ LHR  V+ +  R S   FL P  D VV P  +L+D     +Y
Sbjct:  221 EENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRRY 343          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.596e-21
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = -3
Query:  219 LGVVAHTDLSALTVLVP-NEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 548
            LG+  H+D + LT+L+  NEV GL + KD++W+  K I  A V++IGD IEI+SNG YK++ HR  ++ DK R+S   F +P   T +GPLP LV  EN  KYK   ++DY
Sbjct:  223 LGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLV-KENGVKYKTIDYEDY 332          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 55/125 (44.00%), Postives = 70/125 (56.00%), Query Frame = -3
Query:  243 GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 617
            G D I   +++NYYPPC RP   LG   H D ++LT+L  + V GLQV  + RW   +   +A V++IGD    LSNG+YK+ LHR  V+    R S   FL P  D VV P   LVD  NP  Y
Sbjct:  199 GNDSI---MRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAY 320          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 54/138 (39.13%), Postives = 76/138 (55.07%), Query Frame = -3
Query:  228 KEAAGGDDIE---YMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKF 629
            K+A  GD      +  K+++YPPCPR DL  G+ AHTD   + +L  ++ V GLQ+ KD RWID + + +A+VI+ GDQIE+LSNG+YK+  HR   +    R S   F  P     + P      +E  P     KF
Sbjct:  142 KKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHGNRRSIASFYNPSLKATIAPAAGAATEEAAPPALYPKF 279          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 47/125 (37.60%), Postives = 77/125 (61.60%), Query Frame = -3
Query:  219 KINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 590
            K++ YP CP+P++  G+ AHTD   + +L  ++ V GLQ+ KD  WID   + +++VI++GDQ+E+++NG+YK+++HR    K+  RMS   F  P +D  + P   L   E   +Y +  F DY
Sbjct:  161 KVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGNRMSIASFYNPGSDAEISPASSLACKET--EYPSFVFDDY 283          
The following BLAST results are available for this feature:
BLAST of CB305064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GAOX2_ORYSJ1.739e-2241.80Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI1.739e-2241.80Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
DV4H_CATRO1.739e-2237.98Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH1_ARATH1.739e-2237.301-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GAOX2_ARATH2.272e-2239.10Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
GAOX1_ARATH1.473e-2140.65Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
NCS1_COPJA5.596e-2146.85S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
GAO1B_WHEAT9.545e-2144.00Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
ACCO_MUSAC9.545e-2139.131-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
ACCO1_BRAJU9.545e-2137.601-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305064 ID=CB305064; Name=CB305064; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAATAAAGGATTATT
TATTATTGCTAATACCCGCGATTACATTTCAGAAACAAGATCGCAACAAC
AAACAAGAATCGATAAACGTACAGTGACGAGATAAAACATGAGCGGCCAG
CGGATACTGGTGTTATTTTTCTCATAATGAAAAATCTACTGAGGAAGTTT
GTTAAGTTTACAGTAACTGTAATCCTTGAACTTCTTGGCCTTGTACTTTG
GAGGATTTTCATCGTCAACCAGCTGAGGAAGGGGACCCACCACCGTATCC
GCAGGTGGCTCCAAGAAAACTGGCCACGACATTCTCGTCTTGTCCTTGCT
AACAGTGGTTCTATGCAGCACAGCTTTGTACTTGCCATTGCTCAGAATCT
CGATCTGGTCCCCGATGTGGATGACGAGAGCGTTGGGGATGTACTTGGCA
TCGATCCAACGGTCGTCCTTAAAGACTTGCAGACCAGGAACTTCATTGGG
AACAAGAACGGTGAGGGCAGAAAGATCAGTGTGGGCCACCACTCCAAGAG
CAAGATCAGGACGTGGGCATGGCGGATAATAATTAATCTTGAGCATGTAC
TCAATGTCGTCTCCTCCCGCTGCTTCTTTCA
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