CB305064

Overview
NameCB305064
Unique NameCB305064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6139 contig Csv1_Contig6139:725..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.247e-20
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = -3
Query:  243 MLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 596
            ++++NYYP C RP   LG   H D ++LT+L  + V GL+V+ + RW   +  P ALV+++GD    LSN +Y++ LHR  V+    R S   FL P  DTVV P  +LVDD +P  Y
Sbjct:  213 IMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELVDDHHPRVY 330          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.247e-20
Identity = 55/125 (44.00%), Postives = 70/125 (56.00%), Query Frame = -3
Query:  243 GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 617
            G D I   +++NYYPPC RP   LG   H D ++LT+L  + V GLQV  + RW   +   +A V++IGD    LSNG+YK+ LHR  V+    R S   FL P  D VV P   LVD  NP  Y
Sbjct:  199 GNDSI---MRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAY 320          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.247e-20
Identity = 49/131 (37.40%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  207 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDR-WIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPA-DTVVGPLPQLVDDENPPKYKAKKFKDYSYCK 593
            +++N+YP CP P+ A+G+ AHTD + LT+L  +   GLQVF+++  W+  +  P  LV++IGD   ILSNGK  +V+HR  V+  ++R+S       PA D  + P+ +L     P  Y++  +K+Y   K
Sbjct:  207 IRLNHYPVCPEPERAMGLAAHTDSTILTILHQSNTGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHTRSRISIAYLWGGPAGDVQIAPISKLTGPAEPSLYRSITWKEYLQIK 337          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.628e-20
Identity = 55/125 (44.00%), Postives = 70/125 (56.00%), Query Frame = -3
Query:  243 GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 617
            G D I   +++NYYPPC RP   LG   H D ++LT+L  + V GLQV  + RW   +   +A V++IGD    LSNG+YK+ LHR  V+    R S   FL P  D VV P   LVD  NP  Y
Sbjct:  199 GNDSI---MRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAY 320          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 52/149 (34.90%), Postives = 83/149 (55.70%), Query Frame = -3
Query:  195 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDD--RWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENP---------PKYKAKKFKDYSYCKLNKL 608
            D++  + +N+YP CP+PDL LG+  HTD   +T+L+ ++V GLQ  +DD   WI  + +  A V+++GD   +LSNG++K   H+  V+ + +R+S   F  P  + +V PL  + + E P           YK K  KD    +L KL
Sbjct:  193 DMDQKVVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDDGKTWITVQPVEGAFVVNLGDHGHLLSNGRFKNADHQAVVNSNSSRLSIATFQNPAQEAIVYPL-SVREGEKPILEAPITYTEMYKKKMSKDLELARLKKL 340          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.378e-19
Identity = 46/102 (45.10%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  288 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVV 593
            L++N YPPCP+P    G++ HTD   LT+L  ++V GLQ+ KD+RWI  K  P AL+I+IGD  +  SNG YK+V HR   +    R S   F+ P  D V+
Sbjct:  195 LRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYDAVI 296          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19
Identity = 52/148 (35.14%), Postives = 80/148 (54.05%), Query Frame = -3
Query:  195 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDD--RWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDD----ENP----PKYKAKKFKDYSYCKLNKL 608
            D++  + +NYYP CP+PDL LG+  HTD   +T+L+ ++V GLQ  +DD   WI  + +  A V+++GD    LSNG++K   H+  V+ + +R+S   F  P  +  V PL     +    E P      YK K  +D    +L KL
Sbjct:  191 DMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDDGNTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPEATVYPLKVREGEKAIMEEPITFAEMYKRKMGRDLELARLKKL 338          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19
Identity = 52/148 (35.14%), Postives = 80/148 (54.05%), Query Frame = -3
Query:  195 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDD--RWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDD----ENP----PKYKAKKFKDYSYCKLNKL 608
            D++  + +NYYP CP+PDL LG+  HTD   +T+L+ ++V GLQ  +D+   WI  + +  A V+++GD    LSNG++K   H+  V+ + +R+S   F  P  D  V PL     +    E P      YK K  +D    +L KL
Sbjct:  192 DMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPDATVYPLKVREGEKAILEEPITFAEMYKRKMGRDLELARLKKL 339          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: FL3H_DIACA (Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthus caryophyllus GN=FHT PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.237e-19
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = -3
Query:  279 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKD--DRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPL 608
            D++  + +NYYP CP+PDL LG+  HTD   +T+L+ ++V GLQ  +D    WI  + +P A V+++GD    LSNG++K   H+  V+ + +R+S   F  P  D  V PL
Sbjct:  193 DMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQPVPGAFVVNLGDHGHFLSNGRFKNADHQAVVNSECSRLSIATFQNPSPDATVYPL 304          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: FL3H_CALCH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 52/148 (35.14%), Postives = 79/148 (53.38%), Query Frame = -3
Query:  195 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKD--DRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDD----ENP----PKYKAKKFKDYSYCKLNKL 608
            D++  + +NYYP CP+PDL LG+  HTD   +T+L+ ++V GLQ  +D  + WI  K +  A V+++GD    LSNG++K   H+  V+   +R+S   F  P  + +V PL     +    E P      YK K   D    +L KL
Sbjct:  190 DMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGESWITVKPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSSTSRLSIATFQNPAPEAIVYPLKINEGEKSIMEEPMTFMEMYKKKMSTDLELARLKKL 337          
The following BLAST results are available for this feature:
BLAST of CB305064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GAOX1_ORYSJ1.247e-2042.37Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
GAO1A_WHEAT1.247e-2044.00Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
G3OX4_ARATH1.247e-2037.40Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]
GAO1D_WHEAT1.628e-2044.00Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
FL3H_MALDO2.777e-2034.90Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
G2OX8_ARATH1.378e-1945.10Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
FL3H_MATIN1.800e-1935.14Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FL3H_ARATH2.351e-1935.14Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
FL3H_DIACA5.237e-1939.29Naringenin,2-oxoglutarate 3-dioxygenase OS=Dianthu... [more]
FL3H_CALCH6.840e-1935.14Naringenin,2-oxoglutarate 3-dioxygenase OS=Callist... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305064 ID=CB305064; Name=CB305064; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAATAAAGGATTATT
TATTATTGCTAATACCCGCGATTACATTTCAGAAACAAGATCGCAACAAC
AAACAAGAATCGATAAACGTACAGTGACGAGATAAAACATGAGCGGCCAG
CGGATACTGGTGTTATTTTTCTCATAATGAAAAATCTACTGAGGAAGTTT
GTTAAGTTTACAGTAACTGTAATCCTTGAACTTCTTGGCCTTGTACTTTG
GAGGATTTTCATCGTCAACCAGCTGAGGAAGGGGACCCACCACCGTATCC
GCAGGTGGCTCCAAGAAAACTGGCCACGACATTCTCGTCTTGTCCTTGCT
AACAGTGGTTCTATGCAGCACAGCTTTGTACTTGCCATTGCTCAGAATCT
CGATCTGGTCCCCGATGTGGATGACGAGAGCGTTGGGGATGTACTTGGCA
TCGATCCAACGGTCGTCCTTAAAGACTTGCAGACCAGGAACTTCATTGGG
AACAAGAACGGTGAGGGCAGAAAGATCAGTGTGGGCCACCACTCCAAGAG
CAAGATCAGGACGTGGGCATGGCGGATAATAATTAATCTTGAGCATGTAC
TCAATGTCGTCTCCTCCCGCTGCTTCTTTCA
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