CB305064

Overview
NameCB305064
Unique NameCB305064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6139 contig Csv1_Contig6139:725..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 37/133 (27.82%), Postives = 69/133 (51.88%), Query Frame = -3
Query:  213 MLKINYYPPCPRPDL----ALGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSY 596
            + ++N+YP CP   +     +G   HTD   +++L  N   G Q+  +D  WI      ++  I++GD +++++NG++K+V HR   +    R+S   F  PP    + PLP L+      K K   +K++++
Sbjct:  175 LFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKIAPLPSLM------KGKESLYKEFTW 301          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 39/129 (30.23%), Postives = 68/129 (52.71%), Query Frame = -3
Query:  219 LKINYYPPCPRPD---LALGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 593
            L++N+YP         + +G   HTD   ++VL  N   GLQ+  KD  W+      ++  I++GD +++++NG++K+V HR      ++R+S   F  PP    + PLP LV +++   YK   +  Y
Sbjct:  184 LRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAPLPCLVPEQDDWLYKEFTWSQY 312          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 41/141 (29.08%), Postives = 69/141 (48.94%), Query Frame = -3
Query:  219 MLKINYYPPCPR--------------PDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDR-WIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 596
            +L+IN+YPP  +               +  +G   H+D   LT+L  N V GLQ+      WI     P+   + +GD +++L+NG++ +V HR   +  K RMS   F  PP + ++ PL ++V   +P  Y+   +  Y
Sbjct:  174 LLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVTAHSPCLYRPFTWAQY 314          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 36/128 (28.12%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  219 LKINYYPPCPRPDLA--LGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 593
            L++N+YP      +   +G   HTD   +++L  N+  GLQ+  KD  W+D     ++  + +GD +++++NG++K+V HR   +  ++R+S   F  PP    + PL  LV  ++   Y    +  Y
Sbjct:  180 LRMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQY 307          
BLAST of CB305064 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  270 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFK--DDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQL 593
            +++  YP  P     LGV  HTD  ALT++  + V GL++     + ++     P AL+ ++GD + IL+N +YK+ +HR   +    R + P FL+   D VV PLP L
Sbjct:  259 IRLLRYPSSPN---RLGVQEHTDADALTLMSQDNVKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGL 365          
The following BLAST results are available for this feature:
BLAST of CB305064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G2OX1_PEA1.249e-1227.82Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX2_ARATH1.632e-1230.23Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX2_PEA3.635e-1229.08Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
G2OX3_ARATH1.381e-1128.13Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
ISP7_SCHPO6.856e-1134.55Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305064 ID=CB305064; Name=CB305064; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAATAAAGGATTATT
TATTATTGCTAATACCCGCGATTACATTTCAGAAACAAGATCGCAACAAC
AAACAAGAATCGATAAACGTACAGTGACGAGATAAAACATGAGCGGCCAG
CGGATACTGGTGTTATTTTTCTCATAATGAAAAATCTACTGAGGAAGTTT
GTTAAGTTTACAGTAACTGTAATCCTTGAACTTCTTGGCCTTGTACTTTG
GAGGATTTTCATCGTCAACCAGCTGAGGAAGGGGACCCACCACCGTATCC
GCAGGTGGCTCCAAGAAAACTGGCCACGACATTCTCGTCTTGTCCTTGCT
AACAGTGGTTCTATGCAGCACAGCTTTGTACTTGCCATTGCTCAGAATCT
CGATCTGGTCCCCGATGTGGATGACGAGAGCGTTGGGGATGTACTTGGCA
TCGATCCAACGGTCGTCCTTAAAGACTTGCAGACCAGGAACTTCATTGGG
AACAAGAACGGTGAGGGCAGAAAGATCAGTGTGGGCCACCACTCCAAGAG
CAAGATCAGGACGTGGGCATGGCGGATAATAATTAATCTTGAGCATGTAC
TCAATGTCGTCTCCTCCCGCTGCTTCTTTCA
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