CB305068

Overview
NameCB305068
Unique NameCB305068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP1_OSTOS (Cathepsin B-like cysteine proteinase 1 OS=Ostertagia ostertagi GN=CP-1 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = -2
Query:  320 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCG 547
            PV   + V + F  Y+SG+Y       T +   HAV  +G+G E G PYW++ NSW ++WG++G+F+M  G N CG
Sbjct:  258 PVVATYTVYEDFAHYRSGIYKHKAGRKTGL---HAVKVIGWGEEKGTPYWIVANSWHDDWGENGFFRMHRGSNDCG 330          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 40/125 (32.00%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  290 FSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV-----PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 643
            F+S N+G ++    N T+  ++E   A  +V   P+++A + V+ ++FY  GV+    C   P  ++H ++ VGY  ++ +     PYW++KNSWG +WG+ GY  +  GKN CG++   S  ++
Sbjct:  226 FNSANIGAKIS---NFTMIPKNETVMAGYIVSTGPLAIAADAVE-WQFYIGGVFD-IPCN--PNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII 343          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = -2
Query:  317 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 583
            E  +Q  +    PV  +F V + F  YKSG+Y             HA+  +G+GVE+  PYWLI NSW E+WG++GYF++  G++ C I
Sbjct:  245 EKAIQKEIMKYGPVEASFTVYEDFLNYKSGIYKHITGEALG---GHAIRIIGWGVENKTPYWLIANSWNEDWGENGYFRIVRGRDECSI 330          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 43/119 (36.13%), Postives = 67/119 (56.30%), Query Frame = -2
Query:  290 SENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 637
            ++ V V +  SVN+T   +DE + A  L     +SV    +   +FY+ G+        +   ++HAV+ VGYGV E   P+W++KNSWG  WG++GYF+M  G   CGI T A+  ++
Sbjct:  204 TDGVAVYINSSVNLT---QDETELAAWLYHNSTISVGMNALL-LQFYQHGISHPWWIFCSKYLLDHAVLLVGYGVSEKNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVATSAMI 318          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP3_OSTOS (Cathepsin B-like cysteine proteinase 3 (Fragment) OS=Ostertagia ostertagi GN=CP-3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = -2
Query:  317 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 547
            PV   F V + F  YKSG+Y  T      M   HAV  +G+G E G PYWLI NSW ++WG+ G+++M  G N C I
Sbjct:   92 PVVAGFIVYEDFAHYKSGIYKHTA---GRMTGGHAVKIIGWGKEKGTPYWLIANSWHDDWGEKGFYRMIRGINNCRI 165          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP2_HAECO (Cathepsin B-like cysteine proteinase 2 OS=Haemonchus contortus GN=AC-2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = -2
Query:  317 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 547
            PV  +F V + FR YKSG+Y  T      +   HAV  +G+G E+   +WLI NSW  +WG+ GYF++  G N CGI
Sbjct:  255 PVVASFAVYEDFRHYKSGIYKHTA---GELRGYHAVKMIGWGNENNTDFWLIANSWHNDWGEKGYFRIVRGSNDCGI 328          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = -2
Query:  317 AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 586
            +E E+   +    PV  AF V + F  YKSGVY             HA+  +G+GVE+G PYWL  NSW  +WG  G+FK+  G++ CGI
Sbjct:  236 SEKEIMAEIYKNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVG---GHAIRILGWGVENGTPYWLAANSWNTDWGITGFFKILRGEDHCGI 322          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = -2
Query:  302 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP-------YWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 646
            KF    V   V +   +TL   DE Q A  LV+  P++VA       + Y SGV     C  + +D  H V+ VG+G     P       YW+IKNSWG+NWG+ GY+K+  G+N+CG+ +  S
Sbjct:  237 KFDKSKVVASVSNFSVVTL---DEDQIAANLVKNGPLAVAINAA-WMQTYMSGVSCPYVCAKSRLD--HGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVS 354          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 44/119 (36.97%), Postives = 65/119 (54.62%), Query Frame = -2
Query:  287 SSENVGVQVLDSVNITLGAEDELQHA-VGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 640
            SSE + V      ++ +G+ ++   A +    P+++A +    F  YKSGV   T C      +NH V+ VGY +   VPYW+IKNSWG +WG+ GY ++ MG N C     + YPV A
Sbjct:  229 SSEELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALDA-SSFMSYKSGVL--TAC--IGKQLNHGVLLVGYDMTGEVPYWVIKNSWGGDWGEQGYVRVVMGVNAC---LLSEYPVSA 339          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP1_HAECO (Cathepsin B-like cysteine proteinase 1 OS=Haemonchus contortus GN=AC-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = -2
Query:  317 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 547
            PV  +F V + FR YKSG+Y  T      +   HAV  +G+G E+   +WLI NSW  +WG+ GYF++  G N CGI
Sbjct:  255 PVVASFAVYEDFRHYKSGIYKHTA---GELRGYHAVKMIGWGNENNTDFWLIANSWHNDWGEKGYFRIIRGTNDCGI 328          
The following BLAST results are available for this feature:
BLAST of CB305068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CYSP1_OSTOS1.567e-1340.79Cathepsin B-like cysteine proteinase 1 OS=Ostertag... [more]
CYSP1_DICDI2.047e-1332.00Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CYSP_SCHMA2.673e-1339.33Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CATL_SCHMA4.560e-1336.13Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CYSP3_OSTOS5.956e-1345.45Cathepsin B-like cysteine proteinase 3 (Fragment) ... [more]
CYSP2_HAECO7.778e-1344.16Cathepsin B-like cysteine proteinase 2 OS=Haemonch... [more]
CATB_CHICK7.778e-1341.11Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CYSP_PEA1.016e-1237.10Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
CYSP2_LEIPI1.016e-1236.97Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
CYSP1_HAECO1.327e-1244.16Cathepsin B-like cysteine proteinase 1 OS=Haemonch... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305068 ID=CB305068; Name=CB305068; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGCATTGACAAAATATATAT
AACATCGGTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCT
CAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTAT
ATGGACATTAATCTCCGAATTTATTTTGTACATAAAGCCAACCATTCTGC
TATCATGCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTG
ATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGT
ATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTA
AAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCA
ATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACAGCATGGT
TCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTC
TTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCG
AACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGT
TGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAATTTG
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