CB305068

Overview
NameCB305068
Unique NameCB305068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.464e-19
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  296 ITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 598
            I +G E  L+ AV  V PVSV+ +  +  F+FY  GVY    C     +VNHAV+ VGYG + G  YW+IKNSWGE+WG+ GY  +   K N CGI   AS+P
Sbjct:  227 IPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSRGVYYDENCDRD--NVNHAVLVVGYGTQKGNKYWIIKNSWGESWGNKGYVLLARNKNNACGITNLASFP 327          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.911e-19
Identity = 50/120 (41.67%), Postives = 75/120 (62.50%), Query Frame = -2
Query:  293 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPV 646
            KF   +V  ++     I  G E++LQ+A+ L+ PVSVA +   + F+ Y +GVY    C +   D++H V+AVG G ++G  Y+++KNSWG +WG +GY  M   K N CGI+T ASYP+
Sbjct:  220 KFQEGSVAAKITSYKEIEAGDENDLQNAL-LLNPVSVAIDASHNSFQLYTAGVYYEPACSSE--DLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMASYPI 336          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.258e-19
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = -2
Query:  290 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 646
            K+  EN          +  G E  L  AV  V P+SVA +     F+FYKSG+Y    C +  +D  H V+ VGYG E    +   YWL+KNSWG  WG +GY K+   K N CGIAT ASYP V
Sbjct:  212 KYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLD--HGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 51/104 (49.04%), Postives = 60/104 (57.69%), Query Frame = -2
Query:  290 EDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 583
            E  L  AV  V P+SVA +   + F FYK G+Y    C +  MD  H V+ VGYG E    D   YWL+KNSWGE WG  GY KM    +N CGIA+ ASYP V
Sbjct:  232 EKALMKAVATVGPISVAIDAGHESFMFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDNSKYWLVKNSWGEEWGMGGYIKMAKDRRNHCGIASAASYPTV 333          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 56/123 (45.53%), Postives = 70/123 (56.91%), Query Frame = -2
Query:  296 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 646
            ++ SEN    +   VN+    E  L  AV  + PVS A +   D FRFY  GVY    C +    VNHAV+ VGYG E    DG  YWLIKNSWGE WG +G+ K+   + N CGIA+ AS+P
Sbjct:  212 RYHSENASANITGFVNLPPN-ELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYV--VNHAVLVVGYGFEGNETDGNNYWLIKNSWGEEWGINGFMKIAKDRNNHCGIASQASFP 331          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.486e-19
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  296 ITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 598
            I +G E  L+ AV  V P+SV+ +  +  F+FY  GVY    C     +VNHAV+ VGYG + G  +W+IKNSWGE+WG+ GY  +   K N CGI   AS+P
Sbjct:  227 IPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRD--NVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGYALLARNKNNACGITNMASFP 327          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.486e-19
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = -2
Query:  296 EDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYP 583
            E  L+ AV  + PVSV  +  +  F+FY  GVY  T C   P ++NHAV+AVGYG + G  +W+IKNSWG  WG+ GY  +    K  CGIA  AS+P
Sbjct:  237 EKALKRAVARIGPVSVGIDASLPSFQFYSRGVYYDTGCN--PENINHAVLAVGYGAQKGTKHWIIKNSWGTEWGNKGYVLLARNMKQTCGIANLASFP 332          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.239e-18
Identity = 51/104 (49.04%), Postives = 60/104 (57.69%), Query Frame = -2
Query:  290 EDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 583
            E  L  AV  V P+SVA +   + F FYK G+Y    C +  MD  H V+ VGYG E    D   YWL+KNSWGE WG  GY KM    +N CGIA+ ASYP V
Sbjct:  232 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.618e-18
Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = -2
Query:  296 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYP 514
            F+ YKSG YS TKC N    +NH V AVGYGV DG   W+++NSWG  WGD GY  M +  N CG+AT   YP
Sbjct:  230 FQLYKSGAYSDTKCKNNFFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGDKGYINMVIEGNTCGVATDPLYP 302          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: ACP2_ENTHI (Cysteine proteinase ACP2 (Fragment) OS=Entamoeba histolytica GN=ACP2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = -2
Query:  296 FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYP 514
            F+ YKSG Y+ TKC N    +NH V AVGYGV DG   W+++NSWG +WGD GY  M +  N CG+AT   YP
Sbjct:  232 FQLYKSGAYTDTKCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTSWGDKGYINMVIEGNTCGVATDPLYP 304          
The following BLAST results are available for this feature:
BLAST of CB305068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CATK_RAT1.464e-1947.57Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CYSP3_DICDI1.911e-1941.67Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CATL2_HUMAN4.258e-1943.20Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATL1_CERAE5.561e-1949.04Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
CATJ_RAT5.561e-1945.53Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATK_MOUSE9.486e-1945.63Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
CATK_CHICK9.486e-1946.94Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
CATL1_HUMAN1.239e-1849.04Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]
CPP3_ENTHI1.618e-1854.79Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
ACP2_ENTHI2.113e-1853.42Cysteine proteinase ACP2 (Fragment) OS=Entamoeba h... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305068 ID=CB305068; Name=CB305068; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGCATTGACAAAATATATAT
AACATCGGTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCT
CAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTAT
ATGGACATTAATCTCCGAATTTATTTTGTACATAAAGCCAACCATTCTGC
TATCATGCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTG
ATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGT
ATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTA
AAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCA
ATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACAGCATGGT
TCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTC
TTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCG
AACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGT
TGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAATTTG
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