CB305068

Overview
NameCB305068
Unique NameCB305068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = -2
Query:  296 EDELQHAV--GLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYP 583
            E EL+ A+  GLV  VS+    V  F+ YKSG Y+ T+C N    +NH V AVGYGV DG   W+++NSWG  WG+ GY  M +  N CG+AT   YP
Sbjct:  214 EVELKAAISQGLV-DVSIDASSVQ-FQLYKSGAYTDTQCKNNYFALNHEVCAVGYGVVDGKECWIVRNSWGTGWGEKGYINMVIEGNTCGVATDPLYP 309          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17
Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = -2
Query:  290 VNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 604
            + +  G+E+ L+ AV    PVSV  +     F  YK+GVY    C     +VNH V+ VGYG  DG  YWL+KNSWG ++GD GY +M     N CGIA   SYP +
Sbjct:  228 IELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPSC---TQNVNHGVLVVGYGNLDGKDYWLVKNSWGLHFGDQGYIRMARNSGNHCGIANYPSYPEI 331          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 48/102 (47.06%), Postives = 60/102 (58.82%), Query Frame = -2
Query:  290 GAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 589
            G ED L+ AV    PVSV  +     F  Y+SGVY    C     +VNH V+ VGYG  +G  YWL+KNSWG N+G+ GY +M   K N CGIA+  SYP +
Sbjct:  233 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 331          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = -2
Query:  290 EDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 583
            E  L  AV  V P+SVA +     F+FYKSG+Y    C +   D++H V+ VGYG E    +   +W++KNSWG  WG +GY KM   + N CGIAT ASYP V
Sbjct:  233 EKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSK--DLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV 334          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = -2
Query:  290 EDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 583
            E  L  AV  V P+SVA +     F+FYKSG+Y    C +   D++H V+ VGYG E    +   +W++KNSWG  WG +GY KM   + N CGIAT ASYP V
Sbjct:  233 EKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSK--DLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV 334          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = -2
Query:  290 EDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 583
            E  L  AV  V P+SVA +     F+FYKSG+Y    C +   D++H V+ VGYG E    +   +W++KNSWG  WG +GY KM   + N CGI+T ASYP V
Sbjct:  233 EKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSK--DLDHGVLVVGYGFEGTDSNSSKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGISTAASYPTV 334          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.052e-17
Identity = 48/103 (46.60%), Postives = 66/103 (64.08%), Query Frame = -2
Query:  293 EDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG-----KNMCGIATCASYPV 583
            E  L+ A+   +PVSVA E     F+ Y+SG+++ + CG    +++HAVVAVGYG E+GV YW+++NSWG  WG+ GY +ME          CGIA  ASYPV
Sbjct:  264 ETALKKAISY-QPVSVAIEAGGRIFQHYQSGIFTGS-CGT---NLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASYPV 361          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.052e-17
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = -2
Query:  290 EDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE---DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 583
            E  L  AV  + P+SVA +     F+FYKSG+Y    C +   D++H V+ VGYG E       +W++KNSWG  WG +GY KM   + N CGIAT ASYP V
Sbjct:  233 EKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSK--DLDHGVLVVGYGFEGTDSNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYPTV 333          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.052e-17
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = -2
Query:  290 FSSENVGVQVLDSVNITLGAEDELQHAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 643
            FS+E   V + DSV ++   ++E + A  L +  P+SVA     G +FY+ G+    +   +P  ++HAV+ VGYG    VP+W IKNSWG +WG+ GY+ +  G   CG+ T AS  VV
Sbjct:  368 FSAEKAKVYINDSVELS---QNEQKLAAWLAKRGPISVAINAF-GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 483          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.986e-17
Identity = 44/100 (44.00%), Postives = 66/100 (66.00%), Query Frame = -2
Query:  287 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIAT-CASYPVVA 583
            E++L+  +  V P+ +A +  D   +Y+ GV SS  C N  +  NHAV+ VGYGVE+GVPYW+ KN+WG++WG++GYF++    N CG+    AS  V+A
Sbjct:  262 EEKLKDLLRAVGPIPMAIDAADIVNYYR-GVISS--CENNGL--NHAVLLVGYGVENGVPYWVFKNTWGDDWGENGYFRVRQNVNACGMVNDLASTAVLA 356          
The following BLAST results are available for this feature:
BLAST of CB305068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CPP1_ENTHI1.370e-1747.96Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]
CATS_BOVIN1.370e-1743.93Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATS_HUMAN1.789e-1747.06Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATL2_BOVIN1.789e-1746.15Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATL1_BOVIN1.789e-1746.15Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CATL1_PIG2.337e-1745.19Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
GCP1_ARATH3.052e-1746.60Germination-specific cysteine protease 1 OS=Arabid... [more]
CATL1_CANFA3.052e-1745.63Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
CATF_HUMAN3.052e-1739.17Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATV_NPVLD3.986e-1744.00Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305068 ID=CB305068; Name=CB305068; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGCATTGACAAAATATATAT
AACATCGGTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCT
CAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTAT
ATGGACATTAATCTCCGAATTTATTTTGTACATAAAGCCAACCATTCTGC
TATCATGCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTG
ATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGT
ATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTA
AAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCA
ATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACAGCATGGT
TCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTC
TTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCG
AACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGT
TGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAATTTG
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