CB305068

Overview
NameCB305068
Unique NameCB305068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 48/102 (47.06%), Postives = 58/102 (56.86%), Query Frame = -2
Query:  293 GAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV-PYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPV 589
            G E  L+HAV    PV V        FRFYK GVYS   CG      +HAV+AVGYG       YW++KNSWG +WG  GY  M   + NMC IA+ AS+P+
Sbjct:  298 GDELALKHAVAKRGPVVVGISGSKRSFRFYKDGVYSEGNCGRP----DHAVLAVGYGTHPSYGDYWIVKNSWGTDWGKDGYVYMARNRGNMCHIASAASFPI 395          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = -2
Query:  287 ITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKME----MGKNMCGIATCASYPVVA 598
            +T   E  LQ AV   +PVSV  E     F+ Y SG+++   CG      NH VV VGYG + G  YW+++NSWG+NWG+ GY  ME        +CGIA   SYP  A
Sbjct:  112 VTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGP-CGTAQ---NHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTKA 215          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = -2
Query:  317 VQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 622
            + +  S    L  E++L+  + +  P+SVA +V D    YK+G+  +  C N    +NHAV+ VGYGV++ VPYW++KNSWG  WG+ GYF+++  KN CG+
Sbjct:  226 LSISGSRRYVLQNENKLRELLVVNGPISVAIDVSDLIN-YKAGI--ADICENNE-GLNHAVLLVGYGVKNDVPYWILKNSWGAEWGEEGYFRVQRDKNSCGM 323          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP1_HORVU (Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = -2
Query:  275 NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPVVA*SAP 601
            ++   +E++L  AV   +PVSVA E     F FY  GV++   CG    +++H V  VGYGV EDG  YW +KNSWG +WG+ GY ++E        +CGIA  ASYPV   + P
Sbjct:  250 DVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFTGD-CGT---ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKTYNKP 359          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSEP_VIGMU (Vignain OS=Vigna mungo PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -2
Query:  293 NVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 631
            ++ V +    N+ +  E+ L  AV   +PVSVA +     F+FY  GV++    G+   D+NH V  VGYG   DG  YW+++NSWG  WG+ GY +M+      + +CGIA  ASYP+
Sbjct:  231 DLAVSIDGHENVPVNDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFT----GDCNTDLNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNISKKEGLCGIAMMASYPI 344          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = -2
Query:  293 SSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 640
            S+ N  V  +DS  N+    E  LQ AV   +PVSV  +     F+ Y+SG+++    G+  +  NHA+  VGYG E+   +W++KNSWG+NWG+ GY + E         CGI   ASYPV
Sbjct:  100 STVNAPVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFT----GSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 46/125 (36.80%), Postives = 69/125 (55.20%), Query Frame = -2
Query:  290 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 646
            +++ +N   ++   V++   +ED L  AV  + P++   +   + F+ YK G+Y    C +    V H V+ VGYG +    DG  YWLIKNSWG+ WG  GY K+   K N CGIA+ A YP +
Sbjct:  213 RYNPKNSKAEITGFVSLPQ-SEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDT--VTHGVLVVGYGFKGIETDGNHYWLIKNSWGKRWGIRGYMKLAKDKNNHCGIASYAHYPTI 334          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATC_MOUSE (Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  305 PVSVAFEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 547
            P++VAFEV D F  Y SG+Y  T   +   P ++ NHAV+ VGYG +   G+ YW+IKNSWG NWG+ GYF++  G + C I + A
Sbjct:  368 PMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGRDPVTGIEYWIIKNSWGSNWGESGYFRIRRGTDECAIESIA 453          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = -2
Query:  317 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 583
            E++L+  + L  P+ VA +  D    Y+ G+     C N  +  NHAV+ VGYGVE+ VPYW++KNSWG +WG+ G+FK++   N CGI
Sbjct:  229 EEKLKDVLRLAGPIPVAIDASDILN-YEQGIIKY--CANNGL--NHAVLLVGYGVENNVPYWILKNSWGTDWGEQGFFKIQQNVNACGI 312          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = -2
Query:  293 ENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM----EMGKNMCGIATCASYPV 634
            +N  V  +DS  ++   +E+ L+ AV   +P+S+A E     F+ Y SG++  + CG     ++H VVAVGYG E+G  YW+++NSWG++WG+ GY +M          CGIA   SYP+
Sbjct:  238 KNAKVVTIDSYEDVPTYSEESLKKAVAH-QPISIAIEAGGRAFQLYDSGIFDGS-CGT---QLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASSSGKCGIAIEPSYPI 352          
The following BLAST results are available for this feature:
BLAST of CB305068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CATL_BRUPA1.978e-1647.06Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
ERVB_TABDI3.374e-1643.12Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
CATV_GVCP3.374e-1641.18Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CYSP1_HORVU4.406e-1642.61Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=E... [more]
CYSEP_VIGMU4.406e-1638.66Vignain OS=Vigna mungo PE=1 SV=1[more]
CPGP2_ZINOF4.406e-1639.34Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATR_MOUSE4.406e-1636.80Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATC_MOUSE4.406e-1647.67Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=... [more]
CATV_NPVEP5.755e-1643.82Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
RD21A_ARATH7.516e-1638.33Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305068 ID=CB305068; Name=CB305068; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGCATTGACAAAATATATAT
AACATCGGTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCT
CAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTAT
ATGGACATTAATCTCCGAATTTATTTTGTACATAAAGCCAACCATTCTGC
TATCATGCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTG
ATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGT
ATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTA
AAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCA
ATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACAGCATGGT
TCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTC
TTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCG
AACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGT
TGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAATTTG
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